GWAS939809_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS939809_H (diastolic blood pressure QTL GWAS939809 (human)) Homo sapiens

Symbol: GWAS939809_H
Name: diastolic blood pressure QTL GWAS939809 (human)
RGD ID: 407290833
Trait: diastolic blood pressure
Measurement Type: diastolic blood pressure   (CMO:0000005)    
LOD Score: Not Available
P Value: 3.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386161,291,203 - 161,291,204RGD_MAPPER_PIPELINEGRCh38
GRCh376161,712,235 - 161,712,236RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS939809_HHumandiastolic blood pressure  IAGPrs9456648405850206Based on the EFO term IDGWAS_CATALOGPMID:30224653

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS939809_HHumandiastolic blood pressure  IAGPrs9456648405850206 GWAS_CATALOGPMID:30224653
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs9456648)
Human AssemblyChrPosition (strand)Source
GRCh386161,291,203 - 161,291,204RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407416715GWAS1065691_Hsystolic blood pressure QTL GWAS1065691 (human)3e-08systolic blood pressuresystolic blood pressure (CMO:0000004)6161291203161291204Human
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407290833GWAS939809_Hdiastolic blood pressure QTL GWAS939809 (human)3e-10diastolic blood pressurediastolic blood pressure (CMO:0000005)6161291203161291204Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human
407419590GWAS1068566_Hdiastolic blood pressure QTL GWAS1068566 (human)5e-10diastolic blood pressurediastolic blood pressure (CMO:0000005)6161291203161291204Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS939809_H GCST006627 Diastolic blood pressure 757,601 European ancestry individuals C 0.6767000000000001 3E-10 9.523 rs9456648 0.1166 diastolic blood pressure (EFO:0006336)
 PMID:30224653
GWAS1065691_H GCST90310294 Systolic blood pressure 1,028,980 European ancestry individuals T NR 3E-8 7.523 rs9456648 0.1444 systolic blood pressure (EFO:0006335)
 PMID:38689001
GWAS1068566_H GCST90310295 Diastolic blood pressure 1,028,980 European ancestry individuals T NR 5E-10 9.302 rs9456648 0.1003 diastolic blood pressure (EFO:0006336)
 PMID:38689001
Database Acc Id Source(s)
GWAS Catalog GCST006627 GWAS Catalog

RGD Curation Notes
Note Type Note Reference