GWAS936407_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS936407_H (body height QTL GWAS936407 (human)) Homo sapiens

Symbol: GWAS936407_H
Name: body height QTL GWAS936407 (human)
RGD ID: 407287431
Trait: body height   (VT:0001253)    
Measurement Type: body height   (CMO:0000106)    
LOD Score: Not Available
P Value: 6.0E-18
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386168,603,339 - 168,603,340RGD_MAPPER_PIPELINEGRCh38
GRCh376169,004,019 - 169,004,020RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS936407_HHumanbody height  IAGPrs12530037405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS936407_HHumanbody height  IAGPrs12530037405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS936407_HHumanbody height  IAGPrs12530037405850206 GWAS_CATALOGPMID:36224396
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
body height  (IAGP)

Vertebrate Trait
body height  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1315436SMOC2SPARC related modular calcium binding 26168441184168667992Human

Position Markers

Peak: (rs12530037)
Human AssemblyChrPosition (strand)Source
GRCh386168,603,339 - 168,603,340RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407287431GWAS936407_Hbody height QTL GWAS936407 (human)6e-18body height (VT:0001253)body height (CMO:0000106)6168603339168603340Human
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
406931974GWAS580950_Hleptin measurement QTL GWAS580950 (human)0.000002leptin measurementblood leptin level (CMO:0000779)6168603339168603340Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS580950_H GCST009532 Circulating leptin levels in high cardiovascular risk 351 Spanish mediterranean ancestry men, 615 Spanish mediterranean ancestry women ? 0.37 0.000002 5.699 rs12530037 0.156 leptin measurement (EFO:0005000)
 PMID:31766143
GWAS936407_H GCST90245848 Height 5,314,291 European ancestry, Hispanic or Latin American, East Asian ancestry, African ancestry, South Asian ancestry individuals C 0.4277 6E-18 17.222 rs12530037 0.0057 body height (EFO:0004339)
 PMID:36224396
Database Acc Id Source(s)
GWAS Catalog GCST90245848 GWAS Catalog

RGD Curation Notes
Note Type Note Reference