GWAS929428_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS929428_H (vaginal microbiome measurement QTL GWAS929428 (human)) Homo sapiens

Symbol: GWAS929428_H
Name: vaginal microbiome measurement QTL GWAS929428 (human)
RGD ID: 407280452
Trait: vaginal microbiome measurement
LOD Score: Not Available
P Value: 1.0E-5
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381243,740,614 - 43,740,615RGD_MAPPER_PIPELINEGRCh38
GRCh371244,134,417 - 44,134,418RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS929428_HHumanvaginal microbiome measurement  IAGPrs12312327405850206 GWAS_CATALOGPMID:34282934
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1606495PUS7Lpseudouridine synthase 7 like124371899243758790Human

Position Markers

Peak: (rs12312327)
Human AssemblyChrPosition (strand)Source
GRCh381243,740,614 - 43,740,615RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407280452GWAS929428_Hvaginal microbiome measurement QTL GWAS929428 (human)0.00001vaginal microbiome measurement124374061443740615Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS929428_H GCST90026785 Vaginal microbiome MetaCyc pathway (PRPP-PWY|superpathway of histidine, purine, and pyrimidine biosynthesis) 315 Chinese ancestry individuals C NR 0.00001 5 rs12312327 0.4661 vaginal microbiome measurement (EFO:0011013)
 PMID:34282934
Database Acc Id Source(s)
GWAS Catalog GCST90026785 GWAS Catalog

RGD Curation Notes
Note Type Note Reference