GWAS926944_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS926944_H (body height QTL GWAS926944 (human)) Homo sapiens

Symbol: GWAS926944_H
Name: body height QTL GWAS926944 (human)
RGD ID: 407277968
Trait: body height   (VT:0001253)    
Measurement Type: body height   (CMO:0000106)    
LOD Score: Not Available
P Value: 6E-220
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38310,100,768 - 10,100,769RGD_MAPPER_PIPELINEGRCh38
GRCh37310,142,452 - 10,142,453RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS926944_HHumanbody height  IAGPrs6792811405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS926944_HHumanbody height  IAGPrs6792811405850206Based on the EFO term IDGWAS_CATALOGPMID:36224396

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS926944_HHumanbody height  IAGPrs6792811405850206 GWAS_CATALOGPMID:36224396
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
body height  (IAGP)

Vertebrate Trait
body height  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1343234FANCD2FA complementation group D231002643710101932Human
1603367FANCD2OSFANCD2 opposite strand31008132010108457Human

Position Markers

Peak: (rs6792811)
Human AssemblyChrPosition (strand)Source
GRCh38310,100,768 - 10,100,769RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406927891GWAS576867_Hbody height QTL GWAS576867 (human)1e-26body height (VT:0001253)body height (CMO:0000106)31010076810100769Human
407277968GWAS926944_Hbody height QTL GWAS926944 (human)6e-220body height (VT:0001253)body height (CMO:0000106)31010076810100769Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS576867_H GCST90245844 Height 455,180 Hispanic or Latin American individuals A 0.4497 1E-26 26 rs6792811 0.0234 body height (EFO:0004339)
 PMID:36224396
GWAS926944_H GCST90245848 Height 5,314,291 European ancestry, Hispanic or Latin American, East Asian ancestry, African ancestry, South Asian ancestry individuals A 0.414 6E-220 219.222 rs6792811 0.0205 body height (EFO:0004339)
 PMID:36224396
Database Acc Id Source(s)
GWAS Catalog GCST90245848 GWAS Catalog

RGD Curation Notes
Note Type Note Reference