GWAS915156_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS915156_H (amino acid measurement QTL GWAS915156 (human)) Homo sapiens

Symbol: GWAS915156_H
Name: amino acid measurement QTL GWAS915156 (human)
RGD ID: 407266180
Trait: amino acid measurement
LOD Score: Not Available
P Value: 3.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh384172,092,485 - 172,092,486RGD_MAPPER_PIPELINEGRCh38
GRCh374173,013,636 - 173,013,637RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS915156_HHumanamino acid measurement  IAGPrs1354631405850206 GWAS_CATALOGPMID:31882771
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2301498GALNTL6polypeptide N-acetylgalactosaminyltransferase like 64171813404173041559Human

Position Markers

Peak: (rs1354631)
Human AssemblyChrPosition (strand)Source
GRCh384172,092,485 - 172,092,486RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407266180GWAS915156_Hamino acid measurement QTL GWAS915156 (human)0.000003amino acid measurement4172092485172092486Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS915156_H GCST90133515 1-methylimidazoleacetate levels in elite athletes 490 individuals ? NR 0.000003 5.523 rs1354631 0.31671762 amino acid measurement (EFO:0005134)
 PMID:31882771
Database Acc Id Source(s)
GWAS Catalog GCST90133515 GWAS Catalog

RGD Curation Notes
Note Type Note Reference