GWAS899179_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS899179_H (level of interleukin-5 receptor subunit alpha in blood serum QTL GWAS899179 (human)) Homo sapiens

Symbol: GWAS899179_H
Name: level of interleukin-5 receptor subunit alpha in blood serum QTL GWAS899179 (human)
RGD ID: 407250203
Trait: level of interleukin-5 receptor subunit alpha in blood serum
LOD Score: Not Available
P Value: 1.0E-47
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3833,103,081 - 3,103,082RGD_MAPPER_PIPELINEGRCh38
GRCh3733,144,765 - 3,144,766RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS899179_HHumanlevel of interleukin-5 receptor subunit alpha in blood serum  IAGPrs6800335405850206 GWAS_CATALOGPMID:34857772
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
735921IL5RAinterleukin 5 receptor subunit alpha330663243110374Human

Position Markers

Peak: (rs6800335)
Human AssemblyChrPosition (strand)Source
GRCh3833,103,081 - 3,103,082RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407061923GWAS710899_Hblood protein measurement QTL GWAS710899 (human)2e-33blood protein measurementblood protein measurement (CMO:0000028)331030813103082Human
407202081GWAS851057_Hinterleukin 5 receptor subunit alpha measurement QTL GWAS851057 (human)2e-80interleukin 5 receptor subunit alpha measurement331030813103082Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human
407033033GWAS682009_Hblood protein measurement QTL GWAS682009 (human)2e-36blood protein measurementblood protein measurement (CMO:0000028)331030813103082Human
407250203GWAS899179_Hlevel of interleukin-5 receptor subunit alpha in blood serum QTL GWAS899179 (human)1e-47level of interleukin-5 receptor subunit alpha in blood serum331030813103082Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS682009_H GCST006585 Blood protein levels 3,200 European ancestry individuals C 0.6653125 2E-36 35.699 rs6800335 0.31731862 blood protein measurement (EFO:0007937)
 PMID:30072576
GWAS710899_H GCST006585 Blood protein levels 3,200 European ancestry individuals C 0.6653125 2E-33 32.699 rs6800335 0.30645567 blood protein measurement (EFO:0007937)
 PMID:30072576
GWAS851057_H GCST90087608 Serum levels of protein IL5RA 5,366 Icelandic ancestry individuals T 0.3243 2E-80 79.699 rs6800335 0.364791 interleukin 5 receptor subunit alpha measurement (EFO:0008186)
 PMID:35078996
GWAS899179_H GCST90059988 Interleukin-5 receptor subunit alpha levels 2,893 European ancestry individuals T 0.3568 1E-47 47 rs6800335 0.3776 PMID:34857772
Database Acc Id Source(s)
GWAS Catalog GCST90059988 GWAS Catalog

RGD Curation Notes
Note Type Note Reference