GWAS896159_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS896159_H (vitamin D deficiency QTL GWAS896159 (human)) Homo sapiens

Symbol: GWAS896159_H
Name: vitamin D deficiency QTL GWAS896159 (human)
RGD ID: 407247183
Trait: vitamin D deficiency
LOD Score: Not Available
P Value: 9E-143
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381171,457,027 - 71,457,028RGD_MAPPER_PIPELINEGRCh38
GRCh371171,168,073 - 71,168,074RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1602697NADSYN1NAD synthetase 1117145320371501816Human

Position Markers

Peak: (rs4944958)
Human AssemblyChrPosition (strand)Source
GRCh381171,457,027 - 71,457,028RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357380BW64_HBody weight QTL 64 (human)2.2Body weightpercent fat after exercise training116097893786978937Human
407247183GWAS896159_Hvitamin D deficiency QTL GWAS896159 (human)9e-143vitamin D deficiency117145702771457028Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS896159_H GCST90020244 Vitamin D insufficiency 35,079 European ancestry cases, 140,898 European ancestry controls A 0.203 9E-143 142.046 rs4944958 0.259 vitamin D deficiency (EFO:0003762)
 PMID:34308111
Database Acc Id Source(s)
GWAS Catalog GCST90020244 GWAS Catalog

RGD Curation Notes
Note Type Note Reference