GWAS895850_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS895850_H (cataract QTL GWAS895850 (human)) Homo sapiens

Symbol: GWAS895850_H
Name: cataract QTL GWAS895850 (human)
RGD ID: 407246874
Trait: cataract
LOD Score: Not Available
P Value: 1.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382041,081,398 - 41,081,399RGD_MAPPER_PIPELINEGRCh38
GRCh372039,710,038 - 39,710,039RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS895850_HHumancataract  IAGPrs79779579405850206 GWAS_CATALOGPMID:34594039
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
733198TOP1DNA topoisomerase I204102882241124487Human

Position Markers

Peak: (rs79779579)
Human AssemblyChrPosition (strand)Source
GRCh382041,081,398 - 41,081,399RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300007BP29_HBlood pressure QTL 29 (human)Blood pressurehypertension susceptibility203653600562536005Human
407246874GWAS895850_Hcataract QTL GWAS895850 (human)1e-11cataract204108139841081399Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS895850_H GCST90018594 Cataracts 38,194 East Asian ancestry cases, 140,532 East Asian ancestry controls G 0.441394535 1E-11 11 rs79779579 0.06150283 PMID:34594039
Database Acc Id Source(s)
GWAS Catalog GCST90018594 GWAS Catalog

RGD Curation Notes
Note Type Note Reference