GWAS895553_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS895553_H (neonatal abstinence syndrome QTL GWAS895553 (human)) Homo sapiens

Symbol: GWAS895553_H
Name: neonatal abstinence syndrome QTL GWAS895553 (human)
RGD ID: 407246577
Trait: neonatal abstinence syndrome
LOD Score: Not Available
P Value: 5.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386164,666,790 - 164,666,791RGD_MAPPER_PIPELINEGRCh38
GRCh376165,087,823 - 165,087,824RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS895553_HHumanneonatal abstinence syndrome  IAGPrs1566002405850206 GWAS_CATALOGPMID:35974158
Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs1566002)
Human AssemblyChrPosition (strand)Source
GRCh386164,666,790 - 164,666,791RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406973155GWAS622131_Hsmoking initiation QTL GWAS622131 (human)7e-14smoking initiation6164666790164666791Human
407246338GWAS895314_Hneonatal abstinence syndrome QTL GWAS895314 (human)5e-08neonatal abstinence syndrome6164666790164666791Human
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407246577GWAS895553_Hneonatal abstinence syndrome QTL GWAS895553 (human)0.0000005neonatal abstinence syndrome6164666790164666791Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS622131_H GCST90243985 Smoking initiation 3,382,012 European ancestry, East Asian ancestry, Hispanic or Latin American, African ancestry individuals T 0.387 7E-14 13.155 rs1566002 0.00593 smoking initiation (EFO:0005670)
 PMID:36477530
GWAS895314_H GCST90134522 Neonatal abstinence syndrome 59 African American cases, 35 African American controls, 231 European ancestry cases, 151 European ancestry controls ? NR 5E-8 7.302 rs1566002 0.7864 neonatal abstinence syndrome (EFO:0005799)
 PMID:35974158
GWAS895553_H GCST90134523 Neonatal abstinence syndrome 231 European ancestry cases, 151 European ancestry controls ? NR 5E-7 6.302 rs1566002 0.773179 neonatal abstinence syndrome (EFO:0005799)
 PMID:35974158
Database Acc Id Source(s)
GWAS Catalog GCST90134523 GWAS Catalog

RGD Curation Notes
Note Type Note Reference