GWAS892033_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS892033_H (primary biliary cirrhosis QTL GWAS892033 (human)) Homo sapiens

Symbol: GWAS892033_H
Name: primary biliary cirrhosis QTL GWAS892033 (human)
RGD ID: 407243057
Trait: primary biliary cirrhosis
LOD Score: Not Available
P Value: 2.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386167,108,188 - 167,108,189RGD_MAPPER_PIPELINEGRCh38
GRCh376167,521,676 - 167,521,677RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs4709148)
Human AssemblyChrPosition (strand)Source
GRCh386167,108,188 - 167,108,189RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407243057GWAS892033_Hprimary biliary cirrhosis QTL GWAS892033 (human)2e-10primary biliary cirrhosis6167108188167108189Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS892033_H GCST90061441 Primary biliary cholangitis 2,495 East Asian ancestry cases, 4,283 East Asian ancestry controls T NR 2E-10 9.699 rs4709148 0.246978 primary biliary cirrhosis (EFO:1001486)
 PMID:34033851
Database Acc Id Source(s)
GWAS Catalog GCST90061441 GWAS Catalog

RGD Curation Notes
Note Type Note Reference