GWAS891652_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS891652_H (free cholesterol measurement, intermediate density lipoprotein measurement QTL GWAS891652 (human)) Homo sapiens

Symbol: GWAS891652_H
Name: free cholesterol measurement, intermediate density lipoprotein measurement QTL GWAS891652 (human)
RGD ID: 407242676
Trait: free cholesterol measurement, intermediate density lipoprotein measurement
Measurement Type: blood cholesterol level   (CMO:0002280)    
blood intermediate density lipoprotein cholesterol level   (CMO:0001562)    
LOD Score: Not Available
P Value: 4E-406
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381944,816,374 - 44,816,375RGD_MAPPER_PIPELINEGRCh38
GRCh371945,319,631 - 45,319,632RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS891652_HHumanblood cholesterol level  IAGPrs118147862405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538
GWAS891652_HHumanblood intermediate density lipoprotein cholesterol level  IAGPrs118147862405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS891652_HHumanfree cholesterol measurement  IAGPrs118147862405850206 GWAS_CATALOGPMID:35213538
GWAS891652_HHumanintermediate density lipoprotein measurement  IAGPrs118147862405850206 GWAS_CATALOGPMID:35213538
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
68545BCAMbasal cell adhesion molecule (Lutheran blood group)194480905944821421Human

Position Markers

Peak: (rs118147862)
Human AssemblyChrPosition (strand)Source
GRCh381944,816,374 - 44,816,375RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407216197GWAS865173_Hfree cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS865173 (human)2e-527free cholesterol measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194481637444816375Human
407240133GWAS889109_Hintermediate density lipoprotein measurement QTL GWAS889109 (human)5e-446intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)194481637444816375Human
407024323GWAS673299_Htriglycerides to total lipids in very small VLDL percentage QTL GWAS673299 (human)1e-200blood lipid amount (VT:0003949)blood intermediate density lipoprotein phospholipid level (CMO:0001574)194481637444816375Human
407189188GWAS838164_Hlow density lipoprotein cholesterol measurement, phospholipid measurement QTL GWAS838164 (human)4e-438low density lipoprotein cholesterol measurement, phospholipid measurementblood low density lipoprotein cholesterol level (CMO:0000053)194481637444816375Human
407212417GWAS861393_Hlow density lipoprotein cholesterol measurement QTL GWAS861393 (human)6e-348low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194481637444816375Human
407181571GWAS830547_Htriglycerides:total lipids ratio, low density lipoprotein cholesterol measurement QTL GWAS830547 (human)3e-358triglycerides:total lipids ratio, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194481637444816375Human
407259392GWAS908368_Hcholesteryl ester measurement, very low density lipoprotein cholesterol measurement QTL GWAS908368 (human)1e-324blood lipid amount (VT:0003949)blood very low density lipoprotein cholesterol level (CMO:0000648)194481637444816375Human
407247104GWAS896080_Hcholesteryl ester measurement, intermediate density lipoprotein measurement QTL GWAS896080 (human)6e-506blood lipid amount (VT:0003949)blood intermediate density lipoprotein cholesterol level (CMO:0001562)194481637444816375Human
407316687GWAS965663_Htotal cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS965663 (human)6e-416total cholesterol measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194481637444816375Human
407270158GWAS919134_Htriglycerides:total lipids ratio, intermediate density lipoprotein measurement QTL GWAS919134 (human)2e-397triglycerides:total lipids ratio, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)194481637444816375Human
406900617GWAS549593_Hcoronary artery calcification QTL GWAS549593 (human)1e-10coronary artery calcification194481637444816375Human
407186121GWAS835097_Hcholesteryl ester measurement, low density lipoprotein cholesterol measurement QTL GWAS835097 (human)1e-368blood lipid amount (VT:0003949)blood low density lipoprotein cholesterol level (CMO:0000053)194481637444816375Human
407243210GWAS892186_Hcholesteryl esters:total lipids ratio, intermediate density lipoprotein measurement QTL GWAS892186 (human)1e-456cholesteryl esters:total lipids ratio, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)194481637444816375Human
407238154GWAS887130_Hphospholipid measurement, intermediate density lipoprotein measurement QTL GWAS887130 (human)4e-368triglycerides:total lipids ratio, very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)194481637444816375Human
1559110SCL22_HSerum cholesterol level QTL 22 (human)3.590.000241Lipid levelLDL cholesterol193190759457907594Human
407189140GWAS838116_Hcholesteryl ester measurement, low density lipoprotein cholesterol measurement QTL GWAS838116 (human)1e-411blood lipid amount (VT:0003949)blood intermediate density lipoprotein cholesterol level (CMO:0001562)194481637444816375Human
407190164GWAS839140_Hlow density lipoprotein cholesterol measurement, lipid measurement QTL GWAS839140 (human)2e-420low density lipoprotein cholesterol measurement, lipid measurementblood lipid measurement (CMO:0000050)194481637444816375Human
407326166GWAS975142_Hlow density lipoprotein cholesterol measurement, lipid measurement QTL GWAS975142 (human)9e-453low density lipoprotein cholesterol measurement, lipid measurementblood lipid measurement (CMO:0000050)194481637444816375Human
407213524GWAS862500_Hlow density lipoprotein cholesterol measurement, lipid measurement QTL GWAS862500 (human)7e-409low density lipoprotein cholesterol measurement, lipid measurementblood lipid measurement (CMO:0000050)194481637444816375Human
407310741GWAS959717_Htriglycerides:total lipids ratio, very low density lipoprotein cholesterol measurement QTL GWAS959717 (human)6e-340triglycerides:total lipids ratio, very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)194481637444816375Human
407213271GWAS862247_Hlow density lipoprotein cholesterol measurement, phospholipid measurement QTL GWAS862247 (human)1e-474low density lipoprotein cholesterol measurement, phospholipid measurementblood low density lipoprotein cholesterol level (CMO:0000053)194481637444816375Human
407259282GWAS908258_Hlow density lipoprotein cholesterol measurement, lipid measurement QTL GWAS908258 (human)1e-334low density lipoprotein cholesterol measurement, lipid measurementblood lipid measurement (CMO:0000050)194481637444816375Human
407310034GWAS959010_Hlow density lipoprotein cholesterol measurement QTL GWAS959010 (human)2e-468low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194481637444816375Human
407188115GWAS837091_Hfree cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS837091 (human)4e-492free cholesterol measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194481637444816375Human
407189011GWAS837987_Htotal cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS837987 (human)7e-439total cholesterol measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194481637444816375Human
407308433GWAS957409_Hlow density lipoprotein cholesterol measurement QTL GWAS957409 (human)1e-417low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194481637444816375Human
407333393GWAS982369_Hvery low density lipoprotein cholesterol measurement, cholesteryl esters:total lipids ratio QTL GWAS982369 (human)4e-337very low density lipoprotein cholesterol measurement, cholesteryl esters:total lipids ratioblood very low density lipoprotein cholesterol level (CMO:0000648)194481637444816375Human
407192863GWAS841839_Hcholesterol:total lipids ratio, low density lipoprotein cholesterol measurement QTL GWAS841839 (human)6e-343cholesterol:total lipids ratio, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194481637444816375Human
407238751GWAS887727_Hlipid measurement, intermediate density lipoprotein measurement QTL GWAS887727 (human)2e-428lipid measurement, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)194481637444816375Human
407008217GWAS657193_Hlow density lipoprotein cholesterol measurement QTL GWAS657193 (human)1e-300low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194481637444816375Human
407261082GWAS910058_Htotal cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS910058 (human)2e-334total cholesterol measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194481637444816375Human
407255194GWAS904170_Htotal cholesterol measurement QTL GWAS904170 (human)1e-354total cholesterol measurementblood total cholesterol level (CMO:0000051)194481637444816375Human
1331657COPD9_HChronic obstructive pulmonary disease QTL 9 (human)1.94Chronic airflow obstructionpost-bronchodilator FEV1193102176057021760Human
407287643GWAS936619_Htriglycerides:total lipids ratio, low density lipoprotein cholesterol measurement QTL GWAS936619 (human)2e-384triglycerides:total lipids ratio, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194481637444816375Human
407325657GWAS974633_Htriglycerides:total lipids ratio, low density lipoprotein cholesterol measurement QTL GWAS974633 (human)4e-374triglycerides:total lipids ratio, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194481637444816375Human
407296807GWAS945783_Hfree cholesterol measurement, low density lipoprotein cholesterol measurement QTL GWAS945783 (human)2e-510free cholesterol measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194481637444816375Human
407193315GWAS842291_Hmetabolic syndrome QTL GWAS842291 (human)2e-52metabolic syndrome194481637444816375Human
407325935GWAS974911_Hlow density lipoprotein cholesterol measurement, free cholesterol:total lipids ratio QTL GWAS974911 (human)1e-361low density lipoprotein cholesterol measurement, free cholesterol:total lipids ratioblood low density lipoprotein cholesterol level (CMO:0000053)194481637444816375Human
407331629GWAS980605_Hvery low density lipoprotein cholesterol measurement, phospholipids:total lipids ratio QTL GWAS980605 (human)6e-442very low density lipoprotein cholesterol measurement, phospholipids:total lipids ratioblood very low density lipoprotein cholesterol level (CMO:0000648)194481637444816375Human
407186165GWAS835141_Hlow density lipoprotein cholesterol measurement QTL GWAS835141 (human)4e-381low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)194481637444816375Human
407334071GWAS983047_Hvery low density lipoprotein cholesterol measurement, cholesterol:total lipids ratio QTL GWAS983047 (human)1e-337very low density lipoprotein cholesterol measurement, cholesterol:total lipids ratioblood very low density lipoprotein cholesterol level (CMO:0000648)194481637444816375Human
407242676GWAS891652_Hfree cholesterol measurement, intermediate density lipoprotein measurement QTL GWAS891652 (human)4e-406free cholesterol measurement, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)194481637444816375Human
407310386GWAS959362_Hapolipoprotein B measurement QTL GWAS959362 (human)5e-341apolipoprotein B measurementblood apoliprotein B level (CMO:0000522)194481637444816375Human
407313202GWAS962178_Hvery low density lipoprotein cholesterol measurement, free cholesterol:total lipids ratio QTL GWAS962178 (human)1e-404very low density lipoprotein cholesterol measurement, free cholesterol:total lipids ratioblood very low density lipoprotein cholesterol level (CMO:0000648)194481637444816375Human
406932281GWAS581257_Hdisease QTL GWAS581257 (human)3e-08disease194481637444816375Human
407168058GWAS817034_Hfree cholesterol:total lipids ratio, high density lipoprotein cholesterol measurement QTL GWAS817034 (human)4e-357free cholesterol:total lipids ratio, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)194481637444816375Human
407240059GWAS889035_Hapolipoprotein A 1 measurement, apolipoprotein B measurement QTL GWAS889035 (human)3e-335apolipoprotein A 1 measurement, apolipoprotein B measurementblood apoliprotein B level (CMO:0000522)194481637444816375Human
407267001GWAS915977_Htotal cholesterol measurement, intermediate density lipoprotein measurement QTL GWAS915977 (human)2e-484total cholesterol measurement, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)194481637444816375Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS549593_H GCST90278456 Coronary artery calcification 28,655 European ancestry individuals ? NR 1E-10 10 rs118147862 N/A coronary artery calcification (EFO:0004723)
 PMID:37770635
GWAS581257_H GCST90267290 Number of non-cancer illnesses (standard GWA) 283,743 European ancestry individuals A NR 3E-8 7.523 rs118147862 0.069568 disease (EFO:0000408)
 PMID:37106081
GWAS657193_H GCST006612 LDL cholesterol 215,551 European ancestry individuals, 57,332 African American individuals, 24,743 Hispanic individuals A 0.0369 1E-300 300 rs118147862 0.3977 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:30275531
GWAS673299_H GCST90269705 Triglycerides to total lipids in very small VLDL percentage (UKB data field 23608) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.38286 triglycerides to total lipids in very small VLDL percentage (EFO:0022341)
 PMID:36764567
None Available GCST90269725 Triglycerides to total lipids in small LDL percentage (UKB data field 23628) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.414516 triglycerides to total lipids in small LDL percentage (EFO:0022337)
 PMID:36764567
None Available GCST90269703 Cholesteryl esters to total lipids in very small VLDL percentage (UKB data field 23606) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.379153 cholesteryl esters to total lipids in very small VLDL percentage (EFO:0022259)
 PMID:36764567
None Available GCST90269724 Free cholesterol to total lipids in small LDL percentage (UKB data field 23627) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.410166 free cholesterol to total lipids in small LDL percentage (EFO:0022286)
 PMID:36764567
None Available GCST90269712 Cholesterol to total lipids in large LDL percentage (UKB data field 23615) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.399845 cholesterol to total lipids in large LDL percentage (EFO:0022235)
 PMID:36764567
None Available GCST90269514 Cholesteryl esters in LDL (UKB data field 23417) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.418475 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
None Available GCST90269516 Total free cholesterol levels (UKB data field 23419) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.344807 free cholesterol measurement (EFO:0008591)
 PMID:36764567
None Available GCST90269526 Concentration of LDL particles (UKB data field 23429) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.404973 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:36764567
None Available GCST90269502 LDL cholesterol levels (UKB data field 23405) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.445629 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:36764567
None Available GCST90269638 Cholesteryl esters in medium LDL (UKB data field 23541) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.353749 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
None Available GCST90269637 Cholesterol in medium LDL (UKB data field 23540) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.399773 cholesterol in medium LDL measurement (EFO:0022224)
 PMID:36764567
None Available GCST90269498 Total cholesterol minus HDL-C levels (UKB data field 23401) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.407675 total cholesterol measurement (EFO:0004574)
 PMID:36764567
None Available GCST90269499 Remnant cholesterol (non-HDL, non-LDL -cholesterol) levels (UKB data field 23402) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.351906 remnant cholesterol measurement (EFO:0010815)
 PMID:36764567
None Available GCST90269497 Total cholesterol levels (UKB data field 23400) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.356854 total cholesterol measurement (EFO:0004574)
 PMID:36764567
None Available GCST90269512 Total esterified cholesterol levels (UKB data field 23415) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.359192 esterified cholesterol measurement (EFO:0008589)
 PMID:36764567
None Available GCST90269645 Cholesteryl esters in small LDL (UKB data field 23548) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.373919 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
None Available GCST90269641 Concentration of small LDL particles (UKB data field 23544) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.371838 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:36764567
None Available GCST90269631 Cholesteryl esters in large LDL (UKB data field 23534) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.440488 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
None Available GCST90269628 Total lipids in large LDL (UKB data field 23531) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.444656 total lipids in large LDL (EFO:0022163)
 PMID:36764567
None Available GCST90269636 Phospholipids in medium LDL (UKB data field 23539) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.444187 phospholipids in medium LDL measurement (EFO:0022183)
 PMID:36764567
None Available GCST90269635 Total lipids in medium LDL (UKB data field 23538) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.399261 total lipids in medium LDL (EFO:0022180)
 PMID:36764567
None Available GCST90269627 Concentration of large LDL particles (UKB data field 23530) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.423801 concentration of large LDL particles measurement (EFO:0022160)
 PMID:36764567
None Available GCST90269602 Cholesterol in medium VLDL (UKB data field 23505) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.356533 cholesterol in medium VLDL measurement (EFO:0022225)
 PMID:36764567
None Available GCST90269603 Cholesteryl esters in medium VLDL (UKB data field 23506) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.390587 cholesteryl ester measurement (EFO:0010351)
 PMID:36764567
None Available GCST90269522 Total lipids in LDL (UKB data field 23425) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.440705 total lipids in LDL measurement (EFO:0022308)
 PMID:36764567
None Available GCST90269700 Triglycerides to total lipids in small VLDL percentage (UKB data field 23603) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.406619 triglycerides to total lipids in small VLDL percentage (EFO:0022338)
 PMID:36764567
None Available GCST90269699 Free cholesterol to total lipids in small VLDL percentage (UKB data field 23602) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.42137 free cholesterol to total lipids in small VLDL percentage (EFO:0022287)
 PMID:36764567
None Available GCST90269697 Cholesterol to total lipids in small VLDL percentage (UKB data field 23600) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.381807 cholesterol to total lipids in small VLDL percentage (EFO:0022242)
 PMID:36764567
None Available GCST90269707 Cholesterol to total lipids in IDL percentage (UKB data field 23610) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.435348 cholesterol to total lipids in IDL percentage (EFO:0022233)
 PMID:36764567
None Available GCST90269695 Triglycerides to total lipids in medium VLDL percentage (UKB data field 23598) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.341315 triglycerides to total lipids in medium VLDL percentage (EFO:0022335)
 PMID:36764567
None Available GCST90269741 Phospholipids to total lipids in small HDL percentage (UKB data field 23644) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.366864 phospholipids:total lipids ratio (EFO:0020946)
 PMID:36764567
None Available GCST90269715 Triglycerides to total lipids in large LDL percentage (UKB data field 23618) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.407894 triglycerides to total lipids in large LDL percentage (EFO:0022331)
 PMID:36764567
None Available GCST90269734 Free cholesterol to total lipids in large HDL percentage (UKB data field 23637) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.388906 free cholesterol to total lipids in large HDL percentage (EFO:0022279)
 PMID:36764567
None Available GCST90269744 Free cholesterol to total lipids in small HDL percentage (UKB data field 23647) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.368413 free cholesterol to total lipids in small HDL percentage (EFO:0022285)
 PMID:36764567
None Available GCST90269742 Cholesterol to total lipids in small HDL percentage (UKB data field 23645) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.347643 cholesterol to total lipids in small HDL percentage (EFO:0022240)
 PMID:36764567
None Available GCST90269702 Cholesterol to total lipids in very small VLDL percentage (UKB data field 23605) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.381547 cholesterol to total lipids in very small VLDL percentage (EFO:0022245)
 PMID:36764567
None Available GCST90269691 Phospholipids to total lipids in medium VLDL percentage (UKB data field 23594) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.344258 phospholipids:total lipids ratio (EFO:0020946)
 PMID:36764567
None Available GCST90269710 Triglycerides to total lipids in IDL percentage (UKB data field 23613) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.42297 triglycerides to total lipids in IDL percentage (EFO:0022329)
 PMID:36764567
None Available GCST90269720 Triglycerides to total lipids in medium LDL percentage (UKB data field 23623) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.425139 triglycerides to total lipids in medium LDL percentage (EFO:0022334)
 PMID:36764567
None Available GCST90269538 Apolipoprotein B to apolipoprotein A1 ratio (UKB data field 23441) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.39067 apolipoprotein B to apolipoprotein A1 ratio (EFO:0021897)
 PMID:36764567
None Available GCST90269536 Apolipoprotein B levels (UKB data field 23439) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.400037 apolipoprotein B measurement (EFO:0004615)
 PMID:36764567
None Available GCST90269625 Free cholesterol in IDL (UKB data field 23528) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.426767 free cholesterol in IDL measurement (EFO:0022181)
 PMID:36764567
None Available GCST90269622 Phospholipids in IDL (UKB data field 23525) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.403564 phospholipids in IDL measurement (EFO:0022164)
 PMID:36764567
None Available GCST90269621 Total lipids in IDL (UKB data field 23524) 88,329 European ancestry individuals A 0.045747 1E-200 200 rs118147862 0.437177 total lipids in IDL (EFO:0022161)
 PMID:36764567
GWAS817034_H GCST90092849 Free cholesterol to total lipids ratio in large HDL 115,082 European ancestry individuals G 0.954236 4E-357 356.398 rs118147862 0.382271 free cholesterol:total lipids ratio (EFO:0020945)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:35213538
GWAS830547_H GCST90092867 Triglycerides to total lipids ratio in large LDL 115,082 European ancestry individuals G 0.954236 3E-358 357.523 rs118147862 0.399781 triglycerides:total lipids ratio (EFO:0020947)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS835097_H GCST90092884 Cholesteryl ester levels in LDL 115,082 European ancestry individuals G 0.954236 1E-368 368 rs118147862 0.416757 cholesteryl ester measurement (EFO:0010351)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS835141_H GCST90092863 Concentration of large LDL particles 115,082 European ancestry individuals G 0.954236 4E-381 380.398 rs118147862 0.42323 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS837091_H GCST90092860 Free cholesterol levels in large LDL 115,082 European ancestry individuals G 0.954236 4E-492 491.398 rs118147862 0.474072 free cholesterol measurement (EFO:0008591)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS837987_H GCST90092856 Cholesterol levels in large LDL 115,082 European ancestry individuals G 0.954236 7E-439 438.155 rs118147862 0.450854 total cholesterol measurement (EFO:0004574)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS838116_H GCST90092858 Cholesteryl ester levels in large LDL 115,082 European ancestry individuals G 0.954236 1E-411 411 rs118147862 0.437594 cholesteryl ester measurement (EFO:0010351)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS838164_H GCST90092864 Phospholipid levels in large LDL 115,082 European ancestry individuals G 0.954236 4E-438 437.398 rs118147862 0.452191 low density lipoprotein cholesterol measurement (EFO:0004611)
phospholipid measurement (EFO:0004639)
 PMID:35213538
GWAS839140_H GCST90092862 Total lipid levels in large LDL 115,082 European ancestry individuals G 0.954236 2E-420 419.699 rs118147862 0.441878 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:35213538
GWAS841839_H GCST90092857 Cholesterol to total lipids ratio in large LDL 115,082 European ancestry individuals G 0.954236 6E-343 342.222 rs118147862 0.390812 cholesterol:total lipids ratio (EFO:0020943)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS842291_H GCST90086077 Dyslipidemia 30,244 European ancestry cases, 26,393 European ancestry controls A 0.038 2E-52 51.699 rs118147862 0.58 metabolic syndrome (EFO:0000195)
 PMID:33893285
GWAS861393_H GCST90092887 Concentration of LDL particles 115,082 European ancestry individuals G 0.954236 6E-348 347.222 rs118147862 0.405483 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS862247_H GCST90092888 Phospholipid levels in LDL 115,082 European ancestry individuals G 0.954236 1E-474 474 rs118147862 0.473027 low density lipoprotein cholesterol measurement (EFO:0004611)
phospholipid measurement (EFO:0004639)
 PMID:35213538
GWAS862500_H GCST90092886 Total lipid levels in LDL 115,082 European ancestry individuals G 0.954236 7E-409 408.155 rs118147862 0.438557 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:35213538
GWAS865173_H GCST90092885 Free cholesterol levels in LDL 115,082 European ancestry individuals G 0.954236 2E-527 526.699 rs118147862 0.494435 free cholesterol measurement (EFO:0008591)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS887130_H GCST90092839 Phospholipid levels in IDL 115,082 European ancestry individuals G 0.954236 4E-368 367.398 rs118147862 0.402622 phospholipid measurement (EFO:0004639)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS887727_H GCST90092837 Total lipid levels in IDL 115,082 European ancestry individuals G 0.954236 2E-428 427.699 rs118147862 0.435428 lipid measurement (EFO:0004529)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS889035_H GCST90092810 Ratio of apolipoprotein B to apolipoprotein A1 levels 115,082 European ancestry individuals G 0.954236 3E-335 334.523 rs118147862 0.391862 apolipoprotein A 1 measurement (EFO:0004614)
apolipoprotein B measurement (EFO:0004615)
 PMID:35213538
GWAS889109_H GCST90092838 Concentration of IDL particles 115,082 European ancestry individuals G 0.954236 5E-446 445.302 rs118147862 0.454866 intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS891652_H GCST90092835 Free cholesterol levels in IDL 115,082 European ancestry individuals G 0.954236 4E-406 405.398 rs118147862 0.424446 free cholesterol measurement (EFO:0008591)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS892186_H GCST90092834 Cholesteryl esters to total lipids ratio in IDL 115,082 European ancestry individuals G 0.954236 1E-456 456 rs118147862 0.45231 cholesteryl esters:total lipids ratio (EFO:0020944)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS896080_H GCST90092833 Cholesteryl ester levels in IDL 115,082 European ancestry individuals G 0.954236 6E-506 505.222 rs118147862 0.47268 cholesteryl ester measurement (EFO:0010351)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS904170_H GCST90092930 Total cholesterol minus HDL-C levels 115,082 European ancestry individuals G 0.954236 1E-354 354 rs118147862 0.407564 total cholesterol measurement (EFO:0004574)
 PMID:35213538
None Available GCST90092912 Phospholipid levels in medium LDL 115,082 European ancestry individuals G 0.954236 1E-411 411 rs118147862 0.442175 low density lipoprotein cholesterol measurement (EFO:0004611)
phospholipid measurement (EFO:0004639)
 PMID:35213538
GWAS908258_H GCST90092910 Total lipid levels in medium LDL 115,082 European ancestry individuals G 0.954236 1E-334 334 rs118147862 0.398564 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:35213538
GWAS908368_H GCST90092918 Cholesteryl ester levels in medium VLDL 115,082 European ancestry individuals G 0.954236 1E-324 324 rs118147862 0.388546 cholesteryl ester measurement (EFO:0010351)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS910058_H GCST90092904 Cholesterol levels in medium LDL 115,082 European ancestry individuals G 0.954236 2E-334 333.699 rs118147862 0.398603 total cholesterol measurement (EFO:0004574)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS915977_H GCST90092831 Cholesterol levels in IDL 115,082 European ancestry individuals G 0.954236 2E-484 483.699 rs118147862 0.46257 total cholesterol measurement (EFO:0004574)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
None Available GCST90092832 Cholesterol to total lipids ratio in IDL 115,082 European ancestry individuals G 0.954236 1E-411 411 rs118147862 0.428399 cholesterol:total lipids ratio (EFO:0020943)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS919134_H GCST90092842 Triglycerides to total lipids ratio in IDL 115,082 European ancestry individuals G 0.954236 2E-397 396.699 rs118147862 0.415723 triglycerides:total lipids ratio (EFO:0020947)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS936619_H GCST90092915 Triglycerides to total lipids ratio in medium LDL 115,082 European ancestry individuals G 0.954236 2E-384 383.699 rs118147862 0.417558 triglycerides:total lipids ratio (EFO:0020947)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS945783_H GCST90092908 Free cholesterol levels in medium LDL 115,082 European ancestry individuals G 0.954236 2E-510 509.699 rs118147862 0.491055 free cholesterol measurement (EFO:0008591)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS957409_H GCST90092883 LDL cholesterol levels 115,082 European ancestry individuals G 0.954236 1E-417 417 rs118147862 0.442866 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS959010_H GCST90092814 Clinical LDL cholesterol levels 115,082 European ancestry individuals G 0.954236 2E-468 467.699 rs118147862 0.468389 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS959362_H GCST90092809 Apolipoprotein B levels 115,082 European ancestry individuals G 0.954236 5E-341 340.302 rs118147862 0.401161 apolipoprotein B measurement (EFO:0004615)
 PMID:35213538
GWAS959717_H GCST90093039 Triglycerides to total lipids ratio in very small VLDL 115,082 European ancestry individuals G 0.954236 6E-340 339.222 rs118147862 0.379049 triglycerides:total lipids ratio (EFO:0020947)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS962178_H GCST90092973 Free cholesterol to total lipids ratio in small VLDL 115,082 European ancestry individuals G 0.954236 1E-404 404 rs118147862 0.415596 very low density lipoprotein cholesterol measurement (EFO:0008317)
free cholesterol:total lipids ratio (EFO:0020945)
 PMID:35213538
GWAS965663_H GCST90092956 Cholesterol levels in small LDL 115,082 European ancestry individuals G 0.954236 6E-416 415.222 rs118147862 0.444224 total cholesterol measurement (EFO:0004574)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS974633_H GCST90092967 Triglycerides to total lipids ratio in small LDL 115,082 European ancestry individuals G 0.954236 4E-374 373.398 rs118147862 0.404715 triglycerides:total lipids ratio (EFO:0020947)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS974911_H GCST90092961 Free cholesterol to total lipids ratio in small LDL 115,082 European ancestry individuals G 0.954236 1E-361 361 rs118147862 0.398228 low density lipoprotein cholesterol measurement (EFO:0004611)
free cholesterol:total lipids ratio (EFO:0020945)
 PMID:35213538
GWAS975142_H GCST90092962 Total lipid levels in small LDL 115,082 European ancestry individuals G 0.954236 9E-453 452.046 rs118147862 0.46276 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:35213538
GWAS980605_H GCST90092977 Phospholipids to total lipids ratio in small VLDL 115,082 European ancestry individuals G 0.954236 6E-442 441.222 rs118147862 0.435169 very low density lipoprotein cholesterol measurement (EFO:0008317)
phospholipids:total lipids ratio (EFO:0020946)
 PMID:35213538
None Available GCST90092979 Triglycerides to total lipids ratio in small VLDL 115,082 European ancestry individuals G 0.954236 4E-368 367.398 rs118147862 0.402328 triglycerides:total lipids ratio (EFO:0020947)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS982369_H GCST90093031 Cholesteryl esters to total lipids ratio in very small VLDL 115,082 European ancestry individuals G 0.954236 4E-337 336.398 rs118147862 0.374238 very low density lipoprotein cholesterol measurement (EFO:0008317)
cholesteryl esters:total lipids ratio (EFO:0020944)
 PMID:35213538
GWAS983047_H GCST90093029 Cholesterol to total lipids ratio in very small VLDL 115,082 European ancestry individuals G 0.954236 1E-337 337 rs118147862 0.376971 very low density lipoprotein cholesterol measurement (EFO:0008317)
cholesterol:total lipids ratio (EFO:0020943)
 PMID:35213538
None Available GCST90448454 Memory decline 13,154 European ancestry females, 2,487 African ancestry females ? NR 0.000007 5.155 rs118147862 0.010954 memory performance (EFO:0004874)
 PMID:37984853
None Available GCST90448460 Memory decline 13,154 European ancestry females ? NR 0.000009 5.046 rs118147862 0.011107 memory performance (EFO:0004874)
 PMID:37984853
None Available GCST90448434 Baseline memory in impaired cognition 3,987 European ancestry females ? NR 3E-7 6.523 rs118147862 0.266674 memory performance (EFO:0004874)
 PMID:37984853
Database Acc Id Source(s)
GWAS Catalog GCST90092835 GWAS Catalog

RGD Curation Notes
Note Type Note Reference