GWAS890956_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS890956_H (major depressive disorder QTL GWAS890956 (human)) Homo sapiens

Symbol: GWAS890956_H
Name: major depressive disorder QTL GWAS890956 (human)
RGD ID: 407241980
Trait: major depressive disorder
LOD Score: Not Available
P Value: 7.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381529,564,034 - 29,564,035RGD_MAPPER_PIPELINEGRCh38
GRCh371529,856,238 - 29,856,239RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS890956_HHumanmajor depressive disorder  IAGPrs779405850206 GWAS_CATALOGPMID:38177345
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2311472ENTREP2endosomal transmembrane epsin interactor 2152911771229675409Human

Position Markers

Peak: (rs779)
Human AssemblyChrPosition (strand)Source
GRCh381529,564,034 - 29,564,035RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
406946784GWAS595760_Hunipolar depression QTL GWAS595760 (human)1e-08unipolar depression152956403429564035Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
407241980GWAS890956_Hmajor depressive disorder QTL GWAS890956 (human)0.0000007major depressive disorder152956403429564035Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS890956_H GCST90328131 Major depressive disorder (broad) 258,364 European ancestry cases, 571,252 European ancestry controls, 36,818 African ancestry cases, 161,679 African ancestry controls, 21,980 East Asian ancestry cases, 360,956 East Asian ancestry controls, 4,505 South Asian ancestry cases, 27,176 South Asian ancestry controls, 25,013 Hispanic or Latin American cases, 352,946 Hispanic or Latin American controls A 0.886 7E-7 6.155 rs779 0.0241 PMID:38177345
None Available GCST90020227 Major depressive disorder 340,591 European ancestry cases, 813,676 European ancestry controls ? NR 1E-8 8 rs779 0.0261 PMID:34045744
Database Acc Id Source(s)
GWAS Catalog GCST90328131 GWAS Catalog

RGD Curation Notes
Note Type Note Reference