GWAS889997_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS889997_H (cholesteryl esters:total lipids ratio, intermediate density lipoprotein measurement QTL GWAS889997 (human)) Homo sapiens

Symbol: GWAS889997_H
Name: cholesteryl esters:total lipids ratio, intermediate density lipoprotein measurement QTL GWAS889997 (human)
RGD ID: 407241021
Trait: cholesteryl esters:total lipids ratio, intermediate density lipoprotein measurement
Measurement Type: blood intermediate density lipoprotein cholesterol level   (CMO:0001562)    
LOD Score: Not Available
P Value: 1.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381205,661,765 - 205,661,766RGD_MAPPER_PIPELINEGRCh38
GRCh371205,630,893 - 205,630,894RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS889997_HHumanblood intermediate density lipoprotein cholesterol level  IAGPrs3761916405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS889997_HHumancholesteryl esters:total lipids ratio  IAGPrs3761916405850206 GWAS_CATALOGPMID:35213538
GWAS889997_HHumanintermediate density lipoprotein measurement  IAGPrs3761916405850206 GWAS_CATALOGPMID:35213538
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1346444SLC45A3solute carrier family 45 member 31205657851205680509Human

Position Markers

Peak: (rs3761916)
Human AssemblyChrPosition (strand)Source
GRCh381205,661,765 - 205,661,766RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407241021GWAS889997_Hcholesteryl esters:total lipids ratio, intermediate density lipoprotein measurement QTL GWAS889997 (human)1e-08cholesteryl esters:total lipids ratio, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)1205661765205661766Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS889997_H GCST90092834 Cholesteryl esters to total lipids ratio in IDL 115,082 European ancestry individuals A 0.719334 1E-8 8 rs3761916 0.0256403 cholesteryl esters:total lipids ratio (EFO:0020944)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
Database Acc Id Source(s)
GWAS Catalog GCST90092834 GWAS Catalog

RGD Curation Notes
Note Type Note Reference