GWAS887625_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS887625_H (lipid measurement, intermediate density lipoprotein measurement QTL GWAS887625 (human)) Homo sapiens

Symbol: GWAS887625_H
Name: lipid measurement, intermediate density lipoprotein measurement QTL GWAS887625 (human)
RGD ID: 407238649
Trait: lipid measurement, intermediate density lipoprotein measurement
Measurement Type: blood intermediate density lipoprotein cholesterol level   (CMO:0001562)    
blood lipid measurement   (CMO:0000050)    
LOD Score: Not Available
P Value: 8.0E-11
Variance: Not Available
Position No map positions available.
Population Stats: Not Available



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS887625_HHumanblood intermediate density lipoprotein cholesterol level  IAGPrs751544923405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538
GWAS887625_HHumanblood lipid measurement  IAGPrs751544923405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS887625_HHumanintermediate density lipoprotein measurement  IAGPrs751544923405850206 GWAS_CATALOGPMID:35213538
GWAS887625_HHumanlipid measurement  IAGPrs751544923405850206 GWAS_CATALOGPMID:35213538
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs751544923) No map positions available.


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS885577_H GCST90092838 Concentration of IDL particles 115,082 European ancestry individuals AG 0.94265 1E-15 15 rs751544923 0.0707015 intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS887625_H GCST90092837 Total lipid levels in IDL 115,082 European ancestry individuals AG 0.94265 8E-11 10.097 rs751544923 0.0559005 lipid measurement (EFO:0004529)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS888530_H GCST90092839 Phospholipid levels in IDL 115,082 European ancestry individuals AG 0.94265 2E-10 9.699 rs751544923 0.0544551 phospholipid measurement (EFO:0004639)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS981859_H GCST90093028 Cholesterol levels in very small VLDL 115,082 European ancestry individuals AG 0.94265 3E-10 9.523 rs751544923 0.0541292 total cholesterol measurement (EFO:0004574)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS982052_H GCST90093030 Cholesteryl ester levels in very small VLDL 115,082 European ancestry individuals AG 0.94265 1E-9 9 rs751544923 0.051977 cholesteryl ester measurement (EFO:0010351)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
Database Acc Id Source(s)
GWAS Catalog GCST90092837 GWAS Catalog

RGD Curation Notes
Note Type Note Reference