GWAS886440_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS886440_H (phospholipid measurement, intermediate density lipoprotein measurement QTL GWAS886440 (human)) Homo sapiens

Symbol: GWAS886440_H
Name: phospholipid measurement, intermediate density lipoprotein measurement QTL GWAS886440 (human)
RGD ID: 407237464
Trait: phospholipid measurement, intermediate density lipoprotein measurement
Measurement Type: blood intermediate density lipoprotein cholesterol level   (CMO:0001562)    
LOD Score: Not Available
P Value: 6.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh388115,659,621 - 115,659,622RGD_MAPPER_PIPELINEGRCh38
GRCh378116,671,848 - 116,671,849RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS886440_HHumanblood intermediate density lipoprotein cholesterol level  IAGPrs4876611405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS886440_HHumanintermediate density lipoprotein measurement  IAGPrs4876611405850206 GWAS_CATALOGPMID:35213538
GWAS886440_HHumanphospholipid measurement  IAGPrs4876611405850206 GWAS_CATALOGPMID:35213538
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1323571TRPS1transcriptional repressor GATA binding 18115408496115668975Human

Position Markers

Peak: (rs4876611)
Human AssemblyChrPosition (strand)Source
GRCh388115,659,621 - 115,659,622RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407085123GWAS734099_Hphospholipids in medium LDL measurement QTL GWAS734099 (human)4e-11phospholipids in medium LDL measurementblood low density lipoprotein phospholipid level (CMO:0001568)8115659621115659622Human
406896705GWAS545681_Hbody surface area QTL GWAS545681 (human)6e-11milk polyunsaturated fatty acid amount (VT:0010374)blood lipid measurement (CMO:0000050)8115659621115659622Human
407216519GWAS865495_Hlow density lipoprotein cholesterol measurement QTL GWAS865495 (human)4e-09low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)8115659621115659622Human
407309956GWAS958932_Hfat body mass QTL GWAS958932 (human)8e-17body fat mass (VT:0010482)total body fat mass (CMO:0000305)8115659621115659622Human
407040519GWAS689495_Hpolyunsaturated fatty acid measurement QTL GWAS689495 (human)6e-10milk polyunsaturated fatty acid amount (VT:0010374)blood very low density lipoprotein cholesterol level (CMO:0000648)8115659621115659622Human
407089926GWAS738902_Htriglycerides in IDL measurement QTL GWAS738902 (human)4e-14triglycerides in IDL measurementblood lipoprotein triglyceride level (CMO:0002685)8115659621115659622Human
407298176GWAS947152_Hlow density lipoprotein cholesterol measurement QTL GWAS947152 (human)4e-08low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)8115659621115659622Human
407139139GWAS788115_Hbody mass index QTL GWAS788115 (human)7e-21body mass indexbody mass index (BMI) (CMO:0000105)8115659621115659622Human
407076804GWAS725780_Hapolipoprotein B measurement QTL GWAS725780 (human)1e-11very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)8115659621115659622Human
407008522GWAS657498_Hbody mass index QTL GWAS657498 (human)1e-21body mass indexbody mass index (BMI) (CMO:0000105)8115659621115659622Human
407141133GWAS790109_Hsphingomyelin measurement QTL GWAS790109 (human)2e-10sphingomyelin measurement8115659621115659622Human
407124363GWAS773339_Hpolyunsaturated fatty acid measurement QTL GWAS773339 (human)7e-13milk polyunsaturated fatty acid amount (VT:0010374)milk polyunsaturated fatty acid measurement (CMO:0000821)8115659621115659622Human
407294292GWAS943268_Hvery low density lipoprotein cholesterol measurement, lipid measurement QTL GWAS943268 (human)3e-09very low density lipoprotein cholesterol measurement, lipid measurementblood lipid measurement (CMO:0000050)8115659621115659622Human
406916308GWAS565284_Hlow density lipoprotein cholesterol measurement QTL GWAS565284 (human)5e-13total cholesterol measurementblood total cholesterol level (CMO:0000051)8115659621115659622Human
407129938GWAS778914_Htotal cholesterol in small LDL QTL GWAS778914 (human)3e-10very low density lipoprotein cholesterol measurement, phospholipid measurementblood very low density lipoprotein cholesterol level (CMO:0000648)8115659621115659622Human
407056020GWAS704996_Htotal lipids in very small VLDL measurement QTL GWAS704996 (human)4e-15total lipids in very small VLDL measurement8115659621115659622Human
407077396GWAS726372_Homega-6 polyunsaturated fatty acid measurement QTL GWAS726372 (human)1e-12total lipids in IDL8115659621115659622Human
407141843GWAS790819_Hvery low density lipoprotein cholesterol measurement, esterified cholesterol measurement QTL GWAS790819 (human)1e-09apolipoprotein B measurementblood apoliprotein B level (CMO:0000522)8115659621115659622Human
407104410GWAS753386_Htotal lipids in large LDL QTL GWAS753386 (human)5e-12total lipids in large LDL8115659621115659622Human
407036888GWAS685864_Hfatty acid measurement QTL GWAS685864 (human)3e-11free cholesterol measurement, very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)8115659621115659622Human
407171102GWAS820078_Haspartate aminotransferase measurement, serum alanine aminotransferase measurement, low density lipoprotein triglyceride measurement, body fat percentage, high density lipoprotein cholesterol measurement, sex hormone-binding globulin measurement QTL GWAS820078 (human)3e-27aspartate aminotransferase measurement, serum alanine aminotransferase measurement, low density lipoprotein triglyceride measurement, body fat percentage, high density lipoprotein cholesterol measurement, sex hormone-binding globulin measurementblood high density lipoprotein cholesterol level (CMO:0000052)8115659621115659622Human
407327709GWAS976685_Htotal cholesterol measurement, very low density lipoprotein cholesterol measurement QTL GWAS976685 (human)7e-12total cholesterol measurement, very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)8115659621115659622Human
407194974GWAS843950_Hlow density lipoprotein cholesterol measurement QTL GWAS843950 (human)9e-09low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)8115659621115659622Human
407286749GWAS935725_Htotal cholesterol measurement, very low density lipoprotein cholesterol measurement QTL GWAS935725 (human)4e-10total cholesterol measurement, very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)8115659621115659622Human
407237464GWAS886440_Hphospholipid measurement, intermediate density lipoprotein measurement QTL GWAS886440 (human)6e-09phospholipid measurement, intermediate density lipoprotein measurementblood intermediate density lipoprotein cholesterol level (CMO:0001562)8115659621115659622Human
407079069GWAS728045_Hlow density lipoprotein cholesterol measurement, lipid measurement QTL GWAS728045 (human)8e-11low density lipoprotein cholesterol measurement, lipid measurementblood lipid measurement (CMO:0000050)8115659621115659622Human
407324953GWAS973929_Hvery low density lipoprotein cholesterol measurement, phospholipids:total lipids ratio QTL GWAS973929 (human)9e-10very low density lipoprotein cholesterol measurement, phospholipids:total lipids ratioblood very low density lipoprotein cholesterol level (CMO:0000648)8115659621115659622Human
407125798GWAS774774_Hbody mass index QTL GWAS774774 (human)5e-21body mass indexbody mass index (BMI) (CMO:0000105)8115659621115659622Human
407059428GWAS708404_Hesterified cholesterol measurement QTL GWAS708404 (human)8e-13esterified cholesterol measurement8115659621115659622Human
407333167GWAS982143_Hvery low density lipoprotein cholesterol measurement, phospholipid measurement QTL GWAS982143 (human)8e-12very low density lipoprotein cholesterol measurement, phospholipid measurementblood very low density lipoprotein cholesterol level (CMO:0000648)8115659621115659622Human
407258093GWAS907069_Hcholesteryl ester measurement, very low density lipoprotein cholesterol measurement QTL GWAS907069 (human)8e-09blood lipid amount (VT:0003949)blood very low density lipoprotein cholesterol level (CMO:0000648)8115659621115659622Human
407081709GWAS730685_Hesterified cholesterol measurement, intermediate density lipoprotein measurement QTL GWAS730685 (human)1e-10free cholesterol measurement, very low density lipoprotein cholesterol measurementblood cholesterol level (CMO:0002280)8115659621115659622Human
407116970GWAS765946_Htriglycerides in IDL measurement QTL GWAS765946 (human)7e-10triglycerides in IDL measurementblood lipoprotein triglyceride level (CMO:0002685)8115659621115659622Human
407086893GWAS735869_Htriglyceride measurement, low density lipoprotein cholesterol measurement QTL GWAS735869 (human)6e-12blood lipid amount (VT:0003949)blood very low density lipoprotein cholesterol level (CMO:0000648)8115659621115659622Human
407134699GWAS783675_Hfatty acid measurement QTL GWAS783675 (human)5e-11free cholesterol measurement, very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)8115659621115659622Human
407121515GWAS770491_Hcholine measurement QTL GWAS770491 (human)2e-09blood lipid amount (VT:0003949)blood low density lipoprotein cholesterol level (CMO:0000053)8115659621115659622Human
407055411GWAS704387_Hvery low density lipoprotein cholesterol measurement QTL GWAS704387 (human)5e-15very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)8115659621115659622Human
407157620GWAS806596_Hcholesterol in very small VLDL measurement QTL GWAS806596 (human)9e-12very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)8115659621115659622Human
407033779GWAS682755_Hvery low density lipoprotein cholesterol measurement QTL GWAS682755 (human)7e-11very low density lipoprotein cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)8115659621115659622Human
407111477GWAS760453_Htriglycerides in large LDL measurement QTL GWAS760453 (human)3e-12phospholipids in IDL measurementblood intermediate density lipoprotein phospholipid level (CMO:0001574)8115659621115659622Human
407075761GWAS724737_Hfree cholesterol measurement QTL GWAS724737 (human)4e-12free cholesterol measurementblood cholesterol level (CMO:0002280)8115659621115659622Human
407124401GWAS773377_Hremnant cholesterol measurement QTL GWAS773377 (human)2e-11remnant cholesterol measurement8115659621115659622Human
407157042GWAS806018_Hfree cholesterol in very small VLDL measurement QTL GWAS806018 (human)1e-13free cholesterol in very small VLDL measurement 8115659621115659622Human
407236595GWAS885571_Hintermediate density lipoprotein measurement QTL GWAS885571 (human)3e-08blood lipid amount (VT:0003949)blood very low density lipoprotein cholesterol level (CMO:0000648)8115659621115659622Human
407053051GWAS702027_Hphospholipids in VLDL measurement QTL GWAS702027 (human)7e-17phospholipids in VLDL measurement 8115659621115659622Human
407171775GWAS820751_Hbody fat percentage QTL GWAS820751 (human)7e-28body fat percentagebody fat percentage (CMO:0000302)8115659621115659622Human
407314682GWAS963658_Hfree cholesterol measurement QTL GWAS963658 (human)2e-08lipid measurement, lipoprotein measurementblood lipoprotein measurement (CMO:0002690)8115659621115659622Human
407097021GWAS745997_Hcholesterol esters in medium LDL measurement QTL GWAS745997 (human)5e-10omega-6 polyunsaturated fatty acid measurement8115659621115659622Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS545681_H GCST90245995 Body surface area 337,198 British ancestry individuals ? NR 6E-11 10.222 rs4876611 0.00292329 body surface area (EFO:0022196)
 PMID:36502284
GWAS565284_H GCST90278638 Low density lipoprotein cholesterol levels 92,615 Taiwanese ancestry individuals ? NR 5E-13 12.302 rs4876611 N/A low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38116116
GWAS657498_H GCST009871 Body mass index 457,822 European ancestry individuals ? NR 1E-21 21 rs4876611 N/A body mass index (EFO:0004340)
 PMID:31669095
GWAS682755_H GCST90269500 VLDL cholesterol levels (UKB data field 23403) 88,329 European ancestry individuals A 0.280407 7E-11 10.155 rs4876611 0.034307 very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:36764567
GWAS685864_H GCST90302118 Total fatty acids 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 3E-11 10.523 rs4876611 0.0295 fatty acid measurement (EFO:0005110)
 PMID:38448586
GWAS689495_H GCST90269543 Polyunsaturated fatty acids levels (UKB data field 23446) 88,268 European ancestry individuals A 0.280431 6E-10 9.222 rs4876611 0.0317093 polyunsaturated fatty acid measurement (EFO:0010733)
 PMID:36764567
GWAS702027_H GCST90302158 Phospholipids in very small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2875 7E-17 16.155 rs4876611 0.0367 phospholipids in VLDL measurement (EFO:0022301)
 PMID:38448586
GWAS704387_H GCST90302157 Concentration of very small VLDL particles 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2876 5E-15 14.302 rs4876611 0.0342 very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:38448586
GWAS704996_H GCST90302156 Total lipids in very small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2876 4E-15 14.398 rs4876611 0.0343 total lipids in very small VLDL measurement (EFO:0022156)
 PMID:38448586
GWAS708404_H GCST90301957 Esterified cholesterol levels 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2875 8E-13 12.097 rs4876611 0.0315 esterified cholesterol measurement (EFO:0008589)
 PMID:38448586
None Available GCST90302160 Triglycerides in very small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2868 3E-11 10.523 rs4876611 0.03 triglycerides in very small VLDL measurement (EFO:0022144)
 PMID:38448586
None Available GCST90301975 Total Cholesterol in IDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2875 3E-11 10.523 rs4876611 0.0292 total cholesterol in IDL (EFO:0022184)
 PMID:38448586
GWAS724737_H GCST90301963 Free cholesterol levels 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2876 4E-12 11.398 rs4876611 0.0304 free cholesterol measurement (EFO:0008591)
 PMID:38448586
GWAS725780_H GCST90301946 Apolipoprotein B levels 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 1E-11 11 rs4876611 0.0298 apolipoprotein B measurement (EFO:0004615)
 PMID:38448586
GWAS726372_H GCST90301961 Omega-6 fatty acids levels 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2875 1E-12 12 rs4876611 0.0314 omega-6 polyunsaturated fatty acid measurement (EFO:0005680)
 PMID:38448586
None Available GCST90301979 Free cholesterol in IDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2875 1E-11 11 rs4876611 0.0299 free cholesterol in IDL measurement (EFO:0022181)
 PMID:38448586
GWAS728045_H GCST90302049 Total lipid levels in medium LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 8E-11 10.097 rs4876611 0.0287 low density lipoprotein cholesterol measurement (EFO:0004611)
lipid measurement (EFO:0004529)
 PMID:38448586
GWAS730685_H GCST90301977 Cholesterol esters in IDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2875 1E-10 10 rs4876611 0.0284 esterified cholesterol measurement (EFO:0008589)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:38448586
None Available GCST90302009 Cholesterol esters in large LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 3E-11 10.523 rs4876611 0.0294 cholesterol esters in large LDL measurement (EFO:0022165)
 PMID:38448586
None Available GCST90302007 Total cholesterol in large LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 3E-11 10.523 rs4876611 0.0293 total cholesterol in large LDL (EFO:0022167)
 PMID:38448586
GWAS734099_H GCST90302051 Phospholipids in medium LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 4E-11 10.398 rs4876611 0.0292 phospholipids in medium LDL measurement (EFO:0022183)
 PMID:38448586
None Available GCST90302050 Concentration of medium LDL particles 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 3E-11 10.523 rs4876611 0.0293 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
GWAS735869_H GCST90301993 Triglyceride levels in LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 6E-12 11.222 rs4876611 0.0304 triglyceride measurement (EFO:0004530)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
None Available GCST90301988 Linoleic acid (18:2) levels 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2876 1E-10 10 rs4876611 0.0283 linoleic acid measurement (EFO:0006807)
 PMID:38448586
GWAS738902_H GCST90301985 Triglycerides in IDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 4E-14 13.398 rs4876611 0.0334 triglycerides in IDL measurement (EFO:0022149)
 PMID:38448586
None Available GCST90301982 Concentration of IDL particles 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 5E-13 12.302 rs4876611 0.0318 intermediate density lipoprotein measurement (EFO:0008595)
 PMID:38448586
None Available GCST90302011 Free cholesterol in large LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 1E-10 10 rs4876611 0.0282 free cholesterol in large LDL measurement (EFO:0022176)
 PMID:38448586
None Available GCST90301991 Total cholesterol levels in LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 1E-10 10 rs4876611 0.0284 total cholesterol measurement (EFO:0004574)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
GWAS745997_H GCST90302045 Cholesterol esters in medium LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 5E-10 9.302 rs4876611 0.0275 cholesterol esters in medium LDL measurement (EFO:0022186)
 PMID:38448586
GWAS753386_H GCST90302013 Total lipids in large LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 5E-12 11.302 rs4876611 0.0304 total lipids in large LDL (EFO:0022163)
 PMID:38448586
GWAS760453_H GCST90302017 Triglycerides in large LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 3E-12 11.523 rs4876611 0.0307 triglycerides in large LDL measurement (EFO:0022319)
 PMID:38448586
None Available GCST90302014 Concentration of large LDL particles 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 3E-12 11.523 rs4876611 0.0308 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
None Available GCST90301983 Phospholipids in IDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 3E-12 11.523 rs4876611 0.0308 phospholipids in IDL measurement (EFO:0022164)
 PMID:38448586
GWAS765946_H GCST90269626 Triglycerides in IDL (UKB data field 23529) 88,329 European ancestry individuals A 0.280407 7E-10 9.155 rs4876611 0.0318447 triglycerides in IDL measurement (EFO:0022149)
 PMID:36764567
None Available GCST90301981 Total lipids in IDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 1E-12 12 rs4876611 0.0313 total lipids in IDL (EFO:0022161)
 PMID:38448586
None Available GCST90302043 Total cholesterol in medium LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 6E-10 9.222 rs4876611 0.0273 total cholesterol in medium LDL (EFO:0022185)
 PMID:38448586
GWAS770491_H GCST90302069 Phosphatidylcholine and other choline levels 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2875 2E-9 8.699 rs4876611 0.0264 choline measurement (EFO:0010116)
 PMID:38448586
None Available GCST90302075 Serum total cholesterol levels 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2875 5E-13 12.302 rs4876611 0.0317 total cholesterol measurement (EFO:0004574)
 PMID:38448586
GWAS773339_H GCST90302071 Polyunsaturated fatty acids 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2875 7E-13 12.155 rs4876611 0.0317 polyunsaturated fatty acid measurement (EFO:0010733)
 PMID:38448586
GWAS773377_H GCST90302074 Remnant cholesterol (non-HDL, non-LDL -cholesterol) 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2875 2E-11 10.699 rs4876611 0.0295 remnant cholesterol measurement (EFO:0010815)
 PMID:38448586
None Available GCST90302015 Phospholipids in large LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 1E-11 11 rs4876611 0.03 phospholipids in large LDL measurement (EFO:0022174)
 PMID:38448586
GWAS774774_H GCST90301650 Body mass index 441,761 European ancestry individuals A NR 5E-21 20.302 rs4876611 0.0200246 body mass index (EFO:0004340)
 PMID:37280435
None Available GCST90302098 Concentration of small LDL particles 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 1E-11 11 rs4876611 0.0299 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
None Available GCST90302093 Cholesterol esters in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 1E-10 10 rs4876611 0.0285 esterified cholesterol measurement (EFO:0008589)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
None Available GCST90302099 Phospholipids in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 1E-10 10 rs4876611 0.0284 phospholipids in small LDL measurement (EFO:0022297)
 PMID:38448586
None Available GCST90302097 Total lipids in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 3E-11 10.523 rs4876611 0.0293 total lipids in small LDL (EFO:0022168)
 PMID:38448586
None Available GCST90302101 Triglycerides in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 1E-11 11 rs4876611 0.0299 triglycerides in small LDL measurement (EFO:0022323)
 PMID:38448586
GWAS778914_H GCST90302091 Total Cholesterol in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 3E-10 9.523 rs4876611 0.0279 total cholesterol in small LDL (EFO:0022179)
 PMID:38448586
GWAS783675_H GCST90302055 Monounsaturated fatty acids (16:1, 18:1) levels 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2867 5E-11 10.302 rs4876611 0.0298 fatty acid measurement (EFO:0005110)
 PMID:38448586
GWAS788115_H GCST90179150 Body mass index (MTAG) 694,649 European ancestry individuals A NR 7E-21 20.155 rs4876611 0.02165 body mass index (EFO:0004340)
 PMID:36376304
None Available GCST90302053 Triglycerides in medium LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2874 1E-11 11 rs4876611 0.0298 triglycerides in medium LDL measurement (EFO:0022322)
 PMID:38448586
GWAS790109_H GCST90302103 Sphingomyelins levels 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 110,896 European ancestry individuals A 0.2883 2E-10 9.699 rs4876611 0.0286 sphingomyelin measurement (EFO:0010118)
 PMID:38448586
GWAS790819_H GCST90302106 Cholesterol esters in small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2876 1E-9 9 rs4876611 0.0265 very low density lipoprotein cholesterol measurement (EFO:0008317)
esterified cholesterol measurement (EFO:0008589)
 PMID:38448586
None Available GCST90302104 Total cholesterol in small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.287 5E-10 9.302 rs4876611 0.0277 total cholesterol in small VLDL (EFO:0022171)
 PMID:38448586
None Available GCST90302152 Cholesterol esters in very small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2877 1E-10 10 rs4876611 0.0279 very low density lipoprotein cholesterol measurement (EFO:0008317)
esterified cholesterol measurement (EFO:0008589)
 PMID:38448586
GWAS806018_H GCST90302154 Free cholesterol in very small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2876 1E-13 13 rs4876611 0.0324 free cholesterol in very small VLDL measurement (EFO:0022275)
 PMID:38448586
GWAS806596_H GCST90302150 Total cholesterol in very small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.2876 9E-12 11.046 rs4876611 0.0297 cholesterol in very small VLDL measurement (EFO:0022231)
 PMID:38448586
GWAS820078_H GCST90038594 Metabolic biomarkers (multivariate analysis) 389,354 European ancestry individuals G 0.72 3E-27 26.523 rs4876611 N/A aspartate aminotransferase measurement (EFO:0004736)
serum alanine aminotransferase measurement (EFO:0004735)
low density lipoprotein triglyceride measurement (EFO:0009946)
body fat percentage (EFO:0007800)
More... 		PMID:33980691
None Available GCST90020235 Triglycerides 429,011 European ancestry individuals G 0.72 6E-10 9.222 rs4876611 0.014 triglyceride measurement (EFO:0004530)
 PMID:33980691
GWAS820751_H GCST90020232 Body fat percentage 442,278 European ancestry individuals G 0.72 7E-28 27.155 rs4876611 0.018 body fat percentage (EFO:0007800)
 PMID:33980691
None Available GCST90092870 Cholesteryl ester levels in large VLDL 115,082 European ancestry individuals A 0.279224 2E-9 8.699 rs4876611 0.0273791 cholesteryl ester measurement (EFO:0010351)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS843950_H GCST90092863 Concentration of large LDL particles 115,082 European ancestry individuals A 0.279224 9E-9 8.046 rs4876611 0.0263639 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS865495_H GCST90092887 Concentration of LDL particles 115,082 European ancestry individuals A 0.279224 4E-9 8.398 rs4876611 0.026982 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS885571_H GCST90092838 Concentration of IDL particles 115,082 European ancestry individuals A 0.279224 3E-8 7.523 rs4876611 0.0251218 intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
GWAS886440_H GCST90092839 Phospholipid levels in IDL 115,082 European ancestry individuals A 0.279224 6E-9 8.222 rs4876611 0.02585 phospholipid measurement (EFO:0004639)
intermediate density lipoprotein measurement (EFO:0008595)
 PMID:35213538
None Available GCST90092933 Omega-6 fatty acid levels 115,006 European ancestry individuals A 0.279226 5E-10 9.302 rs4876611 0.0278828 omega-6 polyunsaturated fatty acid measurement (EFO:0005680)
 PMID:35213538
GWAS907069_H GCST90092918 Cholesteryl ester levels in medium VLDL 115,082 European ancestry individuals A 0.279224 8E-9 8.097 rs4876611 0.0262762 cholesteryl ester measurement (EFO:0010351)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90092924 Phospholipid levels in medium VLDL 115,082 European ancestry individuals A 0.279224 3E-10 9.523 rs4876611 0.0290319 very low density lipoprotein cholesterol measurement (EFO:0008317)
phospholipid measurement (EFO:0004639)
 PMID:35213538
GWAS935725_H GCST90092916 Cholesterol levels in medium VLDL 115,082 European ancestry individuals A 0.279224 4E-10 9.398 rs4876611 0.0287217 total cholesterol measurement (EFO:0004574)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90092923 Concentration of medium VLDL particles 115,082 European ancestry individuals A 0.279224 6E-10 9.222 rs4876611 0.0283724 very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90092920 Free cholesterol levels in medium VLDL 115,082 European ancestry individuals A 0.279224 5E-11 10.302 rs4876611 0.0301524 free cholesterol measurement (EFO:0008591)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90092998 Free cholesterol levels in VLDL 115,082 European ancestry individuals A 0.279224 1E-10 10 rs4876611 0.0294341 free cholesterol measurement (EFO:0008591)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90093000 Concentration of VLDL particles 115,082 European ancestry individuals A 0.279224 9E-12 11.046 rs4876611 0.0311239 very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90092943 Remnant cholesterol (non-HDL, non-LDL -cholesterol) 115,082 European ancestry individuals A 0.279224 6E-10 9.222 rs4876611 0.0282694 remnant cholesterol measurement (EFO:0010815)
 PMID:35213538
GWAS943268_H GCST90092922 Total lipid levels in medium VLDL 115,082 European ancestry individuals A 0.279224 3E-9 8.523 rs4876611 0.0269763 very low density lipoprotein cholesterol measurement (EFO:0008317)
lipid measurement (EFO:0004529)
 PMID:35213538
None Available GCST90092997 Cholesteryl ester levels in VLDL 115,082 European ancestry individuals A 0.279224 6E-12 11.222 rs4876611 0.0316197 cholesteryl ester measurement (EFO:0010351)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS947152_H GCST90092911 Concentration of medium LDL particles 115,082 European ancestry individuals A 0.279224 4E-8 7.398 rs4876611 0.0254416 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
None Available GCST90092809 Apolipoprotein B levels 115,082 European ancestry individuals A 0.279224 1E-9 9 rs4876611 0.0280321 apolipoprotein B measurement (EFO:0004615)
 PMID:35213538
GWAS958932_H GCST90428121 Whole body fat mass (UKB data field 23100) 337,196 European ancestry individuals G NR 8E-17 16.097 rs4876611 0.0219304 fat body mass (EFO:0005409)
 PMID:38538606
None Available GCST90092972 Free cholesterol levels in small VLDL 115,082 European ancestry individuals A 0.279224 3E-11 10.523 rs4876611 0.0306488 free cholesterol measurement (EFO:0008591)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90092970 Cholesteryl ester levels in small VLDL 115,082 European ancestry individuals A 0.279224 6E-12 11.222 rs4876611 0.0315429 cholesteryl ester measurement (EFO:0010351)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90093018 Cholesteryl ester levels in very large VLDL 115,082 European ancestry individuals A 0.279224 3E-8 7.523 rs4876611 0.025086 cholesteryl ester measurement (EFO:0010351)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90092939 Polyunsaturated fatty acid levels 115,006 European ancestry individuals A 0.279226 6E-11 10.222 rs4876611 0.0292036 polyunsaturated fatty acid measurement (EFO:0010733)
 PMID:35213538
GWAS963658_H GCST90092988 Total free cholesterol levels 115,082 European ancestry individuals A 0.279224 2E-8 7.699 rs4876611 0.0253462 free cholesterol measurement (EFO:0008591)
 PMID:35213538
None Available GCST90092974 Total lipid levels in small VLDL 115,082 European ancestry individuals A 0.279224 6E-11 10.222 rs4876611 0.0296945 very low density lipoprotein cholesterol measurement (EFO:0008317)
lipid measurement (EFO:0004529)
 PMID:35213538
GWAS973929_H GCST90093025 Phospholipids to total lipids ratio in very large VLDL 114,160 European ancestry individuals A 0.279236 9E-10 9.046 rs4876611 0.0282522 very low density lipoprotein cholesterol measurement (EFO:0008317)
phospholipids:total lipids ratio (EFO:0020946)
 PMID:35213538
None Available GCST90092989 Total lipid levels in lipoprotein particles 115,082 European ancestry individuals A 0.279224 2E-8 7.699 rs4876611 0.0252493 lipid measurement (EFO:0004529)
lipoprotein measurement (EFO:0004732)
 PMID:35213538
None Available GCST90092963 Concentration of small LDL particles 115,082 European ancestry individuals A 0.279224 2E-9 8.699 rs4876611 0.0274914 low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:35213538
GWAS976685_H GCST90092968 Cholesterol levels in small VLDL 115,082 European ancestry individuals A 0.279224 7E-12 11.155 rs4876611 0.0314936 total cholesterol measurement (EFO:0004574)
very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
None Available GCST90092996 VLDL cholesterol levels 115,082 European ancestry individuals A 0.279224 1E-11 11 rs4876611 0.0311109 very low density lipoprotein cholesterol measurement (EFO:0008317)
 PMID:35213538
GWAS982143_H GCST90092976 Phospholipid levels in small VLDL 115,082 European ancestry individuals A 0.279224 8E-12 11.097 rs4876611 0.0313111 very low density lipoprotein cholesterol measurement (EFO:0008317)
phospholipid measurement (EFO:0004639)
 PMID:35213538
Database Acc Id Source(s)
GWAS Catalog GCST90092839 GWAS Catalog

RGD Curation Notes
Note Type Note Reference