GWAS881040_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS881040_H (red blood cell density measurement QTL GWAS881040 (human)) Homo sapiens

Symbol: GWAS881040_H
Name: red blood cell density measurement QTL GWAS881040 (human)
RGD ID: 407232064
Trait: red blood cell density measurement
LOD Score: Not Available
P Value: 7.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386163,334,784 - 163,334,785RGD_MAPPER_PIPELINEGRCh38
GRCh376163,755,816 - 163,755,817RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS881040_HHumanred blood cell density measurement  IAGPrs9458809405850206 GWAS_CATALOGPMID:32888493
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs9458809)
Human AssemblyChrPosition (strand)Source
GRCh386163,334,784 - 163,334,785RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407176112GWAS825088_Hred blood cell density measurement QTL GWAS825088 (human)1e-11red blood cell density measurement6163334784163334785Human
407232064GWAS881040_Hred blood cell density measurement QTL GWAS881040 (human)7e-13red blood cell density measurement6163334784163334785Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS825088_H GCST90002367 Red blood cell count 727,624 African American or Afro-Caribbean, African ancestry, European ancestry, East Asian ancestry, Hispanic or Latin American and South Asian ancestry individuals C 0.18591 1E-11 11 rs9458809 N/A red blood cell density measurement (EFO:0007978)
 PMID:32888493
GWAS881040_H GCST90002363 Red blood cell count 545,203 European ancestry individuals C 0.197223 7E-13 12.155 rs9458809 0.016984 red blood cell density measurement (EFO:0007978)
 PMID:32888493
Database Acc Id Source(s)
GWAS Catalog GCST90002363 GWAS Catalog

RGD Curation Notes
Note Type Note Reference