GWAS880960_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS880960_H (bone density QTL GWAS880960 (human)) Homo sapiens

Symbol: GWAS880960_H
Name: bone density QTL GWAS880960 (human)
RGD ID: 407231984
Trait: bone mineral mass   (VT:0005007)    
Measurement Type: bone mineral density   (CMO:0001226)    
LOD Score: Not Available
P Value: 1E-300
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38778,285,241 - 78,285,242RGD_MAPPER_PIPELINEGRCh38
GRCh37777,914,558 - 77,914,559RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS880960_HHumanbone mineral density  IAGPrs201097970405850206Based on the EFO term IDGWAS_CATALOGPMID:37500982

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS880960_HHumanbone mineral mass  IAGPrs201097970405850206Based on the EFO term IDGWAS_CATALOGPMID:37500982

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS880960_HHumanbone density  IAGPrs201097970405850206 GWAS_CATALOGPMID:37500982
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
735850MAGI2membrane associated guanylate kinase, WW and PDZ domain containing 277801705579453667Human

Position Markers

Peak: (rs201097970)
Human AssemblyChrPosition (strand)Source
GRCh38778,285,241 - 78,285,242RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407231984GWAS880960_Hbone density QTL GWAS880960 (human)1e-300bone mineral mass (VT:0005007)bone mineral density (CMO:0001226)77828524178285242Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS880960_H GCST90321120 Bone mineral density mean 5,862 South Asian ancestry individuals ? NR 1E-300 300 rs201097970 N/A bone density (EFO:0003923)
 PMID:37500982
Database Acc Id Source(s)
GWAS Catalog GCST90321120 GWAS Catalog

RGD Curation Notes
Note Type Note Reference