GWAS877629_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS877629_H (bone density QTL GWAS877629 (human)) Homo sapiens

Symbol: GWAS877629_H
Name: bone density QTL GWAS877629 (human)
RGD ID: 407228653
Trait: bone mineral mass   (VT:0005007)    
Measurement Type: bone mineral density   (CMO:0001226)    
LOD Score: Not Available
P Value: 1E-300
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381433,185,152 - 33,185,153RGD_MAPPER_PIPELINEGRCh38
GRCh371433,654,358 - 33,654,359RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS877629_HHumanbone mineral density  IAGPrs190318871405850206Based on the EFO term IDGWAS_CATALOGPMID:37500982

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS877629_HHumanbone mineral mass  IAGPrs190318871405850206Based on the EFO term IDGWAS_CATALOGPMID:37500982

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS877629_HHumanbone density  IAGPrs190318871405850206 GWAS_CATALOGPMID:37500982
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Vertebrate Trait

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1316218NPAS3neuronal PAS domain protein 3143293478533804173Human

Position Markers

Peak: (rs190318871)
Human AssemblyChrPosition (strand)Source
GRCh381433,185,152 - 33,185,153RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407228653GWAS877629_Hbone density QTL GWAS877629 (human)1e-300bone mineral mass (VT:0005007)bone mineral density (CMO:0001226)143318515233185153Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS877629_H GCST90321120 Bone mineral density mean 5,862 South Asian ancestry individuals ? NR 1E-300 300 rs190318871 N/A bone density (EFO:0003923)
 PMID:37500982
Database Acc Id Source(s)
GWAS Catalog GCST90321120 GWAS Catalog

RGD Curation Notes
Note Type Note Reference