GWAS871454_H QTL Report (Homo sapiens) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: GWAS871454_H (blood protein measurement QTL GWAS871454 (human)) Homo sapiens

Symbol: GWAS871454_H
Name: blood protein measurement QTL GWAS871454 (human)
RGD ID: 407222478
Trait: blood protein measurement
Measurement Type: blood protein measurement   (CMO:0000028)    
LOD Score: Not Available
P Value: 6E-431
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386168,416,784 - 168,416,785RGD_MAPPER_PIPELINEGRCh38
GRCh376168,817,464 - 168,817,465RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS871454_HHumanblood protein measurement  IAGPrs1924696405850206Based on the EFO term IDGWAS_CATALOGPMID:38412862

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS871454_HHumanblood protein measurement  IAGPrs1924696405850206 GWAS_CATALOGPMID:38412862
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
38638751LOC105378141uncharacterized LOC1053781416168413381168421327Human

Position Markers

Peak: (rs1924696)
Human AssemblyChrPosition (strand)Source
GRCh386168,416,784 - 168,416,785RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407217893GWAS866869_Hblood protein measurement QTL GWAS866869 (human)1e-557blood protein measurementblood protein measurement (CMO:0000028)6168416784168416785Human
407233910GWAS882886_Hblood protein measurement QTL GWAS882886 (human)7e-443blood protein measurementblood protein measurement (CMO:0000028)6168416784168416785Human
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407190674GWAS839650_Hblood protein measurement QTL GWAS839650 (human)1e-459blood protein measurementblood protein measurement (CMO:0000028)6168416784168416785Human
407081780GWAS730756_Hblood protein measurement QTL GWAS730756 (human)7e-466blood protein measurementblood protein measurement (CMO:0000028)6168416784168416785Human
407251329GWAS900305_HBMI-adjusted waist circumference QTL GWAS900305 (human)7e-09BMI-adjusted waist circumference6168416784168416785Human
407220540GWAS869516_Hblood protein measurement QTL GWAS869516 (human)2e-422blood protein measurementblood protein measurement (CMO:0000028)6168416784168416785Human
407222478GWAS871454_Hblood protein measurement QTL GWAS871454 (human)6e-431blood protein measurementblood protein measurement (CMO:0000028)6168416784168416785Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human
407202939GWAS851915_Hblood protein measurement QTL GWAS851915 (human)4e-435blood protein measurementblood protein measurement (CMO:0000028)6168416784168416785Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS730756_H GCST90314062 CHRDL1/SMOC2 protein level ratio 43,509 European ancestry individuals ? NR 7E-466 465.155 rs1924696 0.273976 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS839650_H GCST90315770 RGMB/SMOC2 protein level ratio 43,509 European ancestry individuals ? NR 1E-459 459 rs1924696 0.304479 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS851915_H GCST90313433 B4GALT1/SMOC2 protein level ratio 43,509 European ancestry individuals ? NR 4E-435 434.398 rs1924696 0.292588 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS866869_H GCST90315093 HSPG2/SMOC2 protein level ratio 43,509 European ancestry individuals ? NR 1E-557 557 rs1924696 0.330792 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS869516_H GCST90315138 IGFBP6/SMOC2 protein level ratio 43,509 European ancestry individuals ? NR 2E-422 421.699 rs1924696 0.303609 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS871454_H GCST90313549 BTN2A1/SMOC2 protein level ratio 43,509 European ancestry individuals ? NR 6E-431 430.222 rs1924696 0.286134 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS882886_H GCST90314178 COL6A3/SMOC2 protein level ratio 43,509 European ancestry individuals ? NR 7E-443 442.155 rs1924696 0.296354 blood protein measurement (EFO:0007937)
 PMID:38412862
GWAS900305_H GCST009867 Waist circumference adjusted for body mass index 457,690 European ancestry individuals ? NR 7E-9 8.155 rs1924696 N/A BMI-adjusted waist circumference (EFO:0007789)
 PMID:31669095
Database Acc Id Source(s)
GWAS Catalog GCST90313549 GWAS Catalog

RGD Curation Notes
Note Type Note Reference