GWAS869114_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS869114_H (protein measurement QTL GWAS869114 (human)) Homo sapiens

Symbol: GWAS869114_H
Name: protein measurement QTL GWAS869114 (human)
RGD ID: 407220138
Trait: protein measurement
LOD Score: Not Available
P Value: 2.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38319,744,885 - 19,744,886RGD_MAPPER_PIPELINEGRCh38
GRCh37319,786,377 - 19,786,378RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS869114_HHumanprotein measurement  IAGPrs112716940405850206 GWAS_CATALOGPMID:32778093
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs112716940)
Human AssemblyChrPosition (strand)Source
GRCh38319,744,885 - 19,744,886RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407370628GWAS1019604_Hprotein measurement QTL GWAS1019604 (human)3e-10protein measurement31974488519744886Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human
407220138GWAS869114_Hprotein measurement QTL GWAS869114 (human)2e-08protein measurement31974488519744886Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS869114_H GCST011427 Protein quantitative trait loci (liver) 172 European ancestry individuals, 29 Black individuals, 86 individuals T 0.01742 2E-8 7.699 rs112716940 0.2322 protein measurement (EFO:0004747)
 PMID:32778093
GWAS1019604_H GCST011427 Protein quantitative trait loci (liver) 172 European ancestry individuals, 29 Black individuals, 86 individuals T 0.01742 3E-10 9.523 rs112716940 0.03379 protein measurement (EFO:0004747)
 PMID:32778093
Database Acc Id Source(s)
GWAS Catalog GCST011427 GWAS Catalog

RGD Curation Notes
Note Type Note Reference