GWAS866177_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS866177_H (sex hormone-binding globulin measurement QTL GWAS866177 (human)) Homo sapiens

Symbol: GWAS866177_H
Name: sex hormone-binding globulin measurement QTL GWAS866177 (human)
RGD ID: 407217201
Trait: sex hormone-binding globulin measurement
LOD Score: Not Available
P Value: 2.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381750,549,028 - 50,549,029RGD_MAPPER_PIPELINEGRCh38
GRCh371748,626,389 - 48,626,390RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS866177_HHumansex hormone-binding globulin measurement  IAGPrs8077316405850206 GWAS_CATALOGPMID:32042192
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1603970SPATA20spermatogenesis associated 20175054717450555852Human
329344043LOC129664080ReSE screen-validated silencer GRCh37_chr17:48626222-48626443175054886150549082Human

Position Markers

Peak: (rs8077316)
Human AssemblyChrPosition (strand)Source
GRCh381750,549,028 - 50,549,029RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407217201GWAS866177_Hsex hormone-binding globulin measurement QTL GWAS866177 (human)2e-09sex hormone-binding globulin measurement175054902850549029Human
407219880GWAS868856_Hsex hormone-binding globulin measurement QTL GWAS868856 (human)2e-10sex hormone-binding globulin measurement175054902850549029Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS866177_H GCST90012111 Sex hormone-binding globulin levels 370,125 European ancestry individuals T 0.24602500000000005 2E-9 8.699 rs8077316 0.00631398 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
GWAS868856_H GCST90012110 Sex hormone-binding globulin levels adjusted for BMI 368,929 European ancestry individuals T 0.24602500000000005 2E-10 9.699 rs8077316 0.00555329 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:32042192
Database Acc Id Source(s)
GWAS Catalog GCST90012111 GWAS Catalog

RGD Curation Notes
Note Type Note Reference