GWAS865550_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS865550_H (complement factor H-related protein 2 measurement QTL GWAS865550 (human)) Homo sapiens

Symbol: GWAS865550_H
Name: complement factor H-related protein 2 measurement QTL GWAS865550 (human)
RGD ID: 407216574
Trait: complement factor H-related protein 2 measurement
LOD Score: Not Available
P Value: 2.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381196,959,058 - 196,959,059RGD_MAPPER_PIPELINEGRCh38
GRCh371196,928,188 - 196,928,189RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS865550_HHumancomplement factor H-related protein 2 measurement  IAGPrs41310132405850206 GWAS_CATALOGPMID:34260947
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1606035CFHR2complement factor H related 21196943738196959622Human

Position Markers

Peak: (rs41310132)
Human AssemblyChrPosition (strand)Source
GRCh381196,959,058 - 196,959,059RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407216574GWAS865550_Hcomplement factor H-related protein 2 measurement QTL GWAS865550 (human)2e-10complement factor H-related protein 2 measurement1196959058196959059Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS865550_H GCST90019043 Complement factor H-related protein 2 levels 416 European ancestry individuals G 0.009 2E-10 9.699 rs41310132 1.833 complement factor H-related protein 2 measurement (EFO:0600055)
 PMID:34260947
Database Acc Id Source(s)
GWAS Catalog GCST90019043 GWAS Catalog

RGD Curation Notes
Note Type Note Reference