GWAS858572_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS858572_H (cognitive function measurement QTL GWAS858572 (human)) Homo sapiens

Symbol: GWAS858572_H
Name: cognitive function measurement QTL GWAS858572 (human)
RGD ID: 407209596
Trait: cognitive function measurement
LOD Score: Not Available
P Value: 5.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38352,517,249 - 52,517,250RGD_MAPPER_PIPELINEGRCh38
GRCh37352,551,265 - 52,551,266RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS858572_HHumancognitive function measurement  IAGPrs66824127405850206 GWAS_CATALOGPMID:32895543
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1321166STAB1stabilin 135249533852524495Human

Position Markers

Peak: (rs66824127)
Human AssemblyChrPosition (strand)Source
GRCh38352,517,249 - 52,517,250RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407203622GWAS852598_Hexecutive function measurement QTL GWAS852598 (human)2e-09executive function measurement35251724952517250Human
1298487BFD1_HBody fluid distribution QTL 1 (human)3.94Body fluid distributionimpedance ratio33638071262380712Human
407209596GWAS858572_Hcognitive function measurement QTL GWAS858572 (human)5e-11cognitive function measurement35251724952517250Human
1298489RA4_HRheumatoid arthritis QTL 4 (human)0.0283Joint/bone inflammationrheumatoid arthritis33638071262380712Human
1643509BW293_HBody Weight QTL 293 (human)1.42Body weightBMI33638071262380712Human
2289308BW392_HBody weight QTL 392 (human)1.42Body weightBMI33638071262380712Human
1331643COPD16_HChronic obstructive pulmonary disease QTL 16 (human)1.07Chronic airflow obstructionpost-BD FEV1 minus pre-BD FEV1/pre-BD FEV1 x 10034938065175380651Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS852598_H GCST90011296 Executive function (trail making test B) 78,547 British ancestry individuals ? NR 2E-9 8.699 rs66824127 N/A executive function measurement (EFO:0009332)
 PMID:32895543
GWAS858572_H GCST90011293 Cognitive traits (MTAG) 331,679 British ancestry individuals ? NR 5E-11 10.302 rs66824127 N/A cognitive function measurement (EFO:0008354)
 PMID:32895543
Database Acc Id Source(s)
GWAS Catalog GCST90011293 GWAS Catalog

RGD Curation Notes
Note Type Note Reference