GWAS850767_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS850767_H (schizophrenia QTL GWAS850767 (human)) Homo sapiens

Symbol: GWAS850767_H
Name: schizophrenia QTL GWAS850767 (human)
RGD ID: 407201791
Trait: schizophrenia
LOD Score: Not Available
P Value: 6.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh385146,866,199 - 146,866,200RGD_MAPPER_PIPELINEGRCh38
GRCh375146,245,762 - 146,245,763RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS850767_HHumanschizophrenia  IAGPrs319227405850206 GWAS_CATALOGPMID:34380480
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1352838PPP2R2Bprotein phosphatase 2 regulatory subunit Bbeta5146580742147081520Human

Position Markers

Peak: (rs319227)
Human AssemblyChrPosition (strand)Source
GRCh385146,866,199 - 146,866,200RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357314AASTH54_HAllergic/atopic asthma related QTL 54 (human)3.560.0003Reversible airflow obstructiontotal serum IgE5135892246150155845Human
407201791GWAS850767_Hschizophrenia QTL GWAS850767 (human)6e-09schizophrenia5146866199146866200Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS850767_H GCST90053836 Schizophrenia 26,271 East Asian ancestry cases, 40,071 East Asian ancestry controls, 33,640 European ancestry cases, 43,456 European ancestry controls A NR 6E-9 8.222 rs319227 1.05 PMID:34380480
Database Acc Id Source(s)
GWAS Catalog GCST90053836 GWAS Catalog

RGD Curation Notes
Note Type Note Reference