GWAS842921_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS842921_H (post-traumatic stress disorder QTL GWAS842921 (human)) Homo sapiens

Symbol: GWAS842921_H
Name: post-traumatic stress disorder QTL GWAS842921 (human)
RGD ID: 407193945
Trait: post-traumatic stress disorder
LOD Score: Not Available
P Value: 2.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386161,713,962 - 161,713,963RGD_MAPPER_PIPELINEGRCh38
GRCh376162,134,994 - 162,134,995RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
730938PRKNparkin RBR E3 ubiquitin protein ligase6161347417162727766Human

Position Markers

Peak: (rs2315551)
Human AssemblyChrPosition (strand)Source
GRCh386161,713,962 - 161,713,963RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407193945GWAS842921_Hpost-traumatic stress disorder QTL GWAS842921 (human)0.0000002post-traumatic stress disorder6161713962161713963Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS842921_H GCST90020063 Post-traumatic stress disorder 260 South African Colored cases, 343 South African Colored controls ? NR 2E-7 6.699 rs2315551 0.2941 post-traumatic stress disorder (EFO:0001358)
 PMID:34177453
Database Acc Id Source(s)
GWAS Catalog GCST90020063 GWAS Catalog

RGD Curation Notes
Note Type Note Reference