GWAS840986_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS840986_H (lipid measurement QTL GWAS840986 (human)) Homo sapiens

Symbol: GWAS840986_H
Name: lipid measurement QTL GWAS840986 (human)
RGD ID: 407192010
Trait: lipid measurement
Measurement Type: blood lipid measurement   (CMO:0000050)    
LOD Score: Not Available
P Value: 9.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38315,477,382 - 15,477,383RGD_MAPPER_PIPELINEGRCh38
GRCh37315,518,889 - 15,518,890RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS840986_HHumanblood lipid measurement  IAGPrs13074638405850206Based on the EFO term IDGWAS_CATALOGPMID:31882771

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS840986_HHumanlipid measurement  IAGPrs13074638405850206 GWAS_CATALOGPMID:31882771
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
736660COLQcollagen like tail subunit of asymmetric acetylcholinesterase31545013315521706Human

Position Markers

Peak: (rs13074638)
Human AssemblyChrPosition (strand)Source
GRCh38315,477,382 - 15,477,383RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human
407192010GWAS840986_Hlipid measurement QTL GWAS840986 (human)0.000009lipid measurementblood lipid measurement (CMO:0000050)31547738215477383Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS840986_H GCST90134088 Sphingomyelin (d18:2/21:0, d16:2/23:0) levels in elite athletes 490 individuals ? NR 0.000009 5.046 rs13074638 0.28864092 lipid measurement (EFO:0004529)
 PMID:31882771
Database Acc Id Source(s)
GWAS Catalog GCST90134088 GWAS Catalog

RGD Curation Notes
Note Type Note Reference