GWAS828288_H QTL Report (Homo sapiens) - Rat Genome Database
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Summary
QTL Registration
General
QTL: GWAS828288_H (polyunsaturated fatty acid measurement QTL GWAS828288 (human)) Homo sapiens
Symbol:
GWAS828288_H
Name:
polyunsaturated fatty acid measurement QTL GWAS828288 (human)
RGD ID:
407179312
Trait:
adipose unsaturated fatty acid amount (VT:0005285)
milk polyunsaturated fatty acid amount (VT:0010374)
Measurement Type:
milk polyunsaturated fatty acid measurement (CMO:0000821)
LOD Score:
Not Available
P Value:
2.0E-13
Variance:
Not Available
Position
Human Assembly
Chr
Position (strand)
Source
JBrowse
GRCh38
16
15,045,737 - 15,045,738
RGD_MAPPER_PIPELINE
GRCh38
GRCh37
16
15,139,594 - 15,139,595
RGD_MAPPER_PIPELINE
GRCh37
Population Stats:
Not Available
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Annotation
Click to see Annotation Detail View
Experimental Data Annotations
Click to see Annotation Detail View
Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS828288_H
Human
milk polyunsaturated fatty acid measurement
IAGP
rs34955778
405850206
Based on the EFO term ID
GWAS_CATALOG
PMID:35213538
Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS828288_H
Human
adipose unsaturated fatty acid amount
IAGP
rs34955778
405850206
Based on the EFO term ID
GWAS_CATALOG
PMID:35213538
GWAS828288_H
Human
milk polyunsaturated fatty acid amount
IAGP
rs34955778
405850206
Based on the EFO term ID
GWAS_CATALOG
PMID:35213538
Experimental Factor Annotations
Click to see Annotation Detail View
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Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS828288_H
Human
polyunsaturated fatty acid measurement
IAGP
rs34955778
405850206
GWAS_CATALOG
PMID:35213538
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20
30
40
100
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Experimental Data Annotations
Click to see Annotation Detail View
Clinical Measurement
milk polyunsaturated fatty acid measurement
(IAGP)
Vertebrate Trait
adipose unsaturated fatty acid amount
(IAGP)
milk polyunsaturated fatty acid amount
(IAGP)
References
References - curated
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#
Reference Title
Reference Citation
1.
RGD GWAS Catalog Import Pipeline
RGD pipeline to import data from GWAS Catalog and create human variant and QTL records
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Region
Genes in Region
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The following
Genes
overlap with this region.
Full Report
CSV
TAB
Printer
Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1604634
PDXDC1
pyridoxal dependent decarboxylase domain containing 1
16
14974735
15153218
Human
1350127
NTAN1
N-terminal asparagine amidase
16
15037857
15056074
Human
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Position Markers
Peak: (
rs34955778
)
Human Assembly
Chr
Position (strand)
Source
GRCh38
16
15,045,737 - 15,045,738
RGD_MAPPER_PIPELINE
QTLs in Region (GRCh38)
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20
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100
All Rows
The following
QTLs
overlap with this region.
Full Report
CSV
TAB
Printer
Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407179312
GWAS828288_H
polyunsaturated fatty acid measurement QTL GWAS828288 (human)
2e-13
milk polyunsaturated fatty acid amount (VT:0010374)
milk polyunsaturated fatty acid measurement (CMO:0000821)
16
15045737
15045738
Human
407178280
GWAS827256_H
phosphatidylcholine measurement QTL GWAS827256 (human)
2e-12
blood lipid amount (VT:0003949)
16
15045737
15045738
Human
407122010
GWAS770986_H
apolipoprotein A 1 measurement QTL GWAS770986 (human)
4e-10
apolipoprotein A 1 measurement
blood apolipoprotein AI level (CMO:0000520)
16
15045737
15045738
Human
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Additional Information
GWAS QTLs Related by Peak Marker
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Data has come from the GWAS Catalog
Download
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS828288_H
GCST90092939
Polyunsaturated fatty acid levels
115,006 European ancestry individuals
T
0.580038
2E-13
12.699
rs34955778
0.0298264
polyunsaturated fatty acid measurement
(EFO:0010733)
PMID:
35213538
GWAS770986_H
GCST010241
Apolipoprotein A1 levels
393,193 European ancestry individuals
T
0.581303
4E-10
9.398
rs34955778
0.0123761
apolipoprotein A 1 measurement
(EFO:0004614)
PMID:
32203549
GWAS827256_H
GCST90060838
Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels
5,662 Pakistani ancestry individuals
T
NR
2E-12
11.699
rs34955778
0.0756
phosphatidylcholine measurement
(EFO:0010226)
PMID:
34503513
None Available
GCST90060766
Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels
5,662 Pakistani ancestry individuals
T
NR
2E-12
11.699
rs34955778
0.0416
phosphatidylcholine measurement
(EFO:0010226)
PMID:
34503513
None Available
GCST90060926
Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels
5,662 Pakistani ancestry individuals
T
NR
2E-12
11.699
rs34955778
0.0325
phosphatidylcholine measurement
(EFO:0010226)
PMID:
34503513
None Available
GCST90060833
Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels
5,662 Pakistani ancestry individuals
T
NR
2E-12
11.699
rs34955778
0.0416
phosphatidylcholine measurement
(EFO:0010226)
PMID:
34503513
None Available
GCST90060806
Phosphatidylethanolamine(40:2)_[M-H]1- levels
5,662 Pakistani ancestry individuals
T
NR
2E-12
11.699
rs34955778
0.0416
phosphatidylethanolamine measurement
(EFO:0010228)
PMID:
34503513
None Available
GCST90060650
Cholesteryl ester(20:3)_[M+NH4]1+ levels
5,662 Pakistani ancestry individuals
T
NR
2E-12
11.699
rs34955778
0.0416
cholesteryl ester 20:3 measurement
(EFO:0010347)
PMID:
34503513
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External Database Links
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Database
Acc Id
Source(s)
GWAS Catalog
GCST90092939
GWAS Catalog
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RGD Curation Notes
Note Type
Note
Reference