GWAS828288_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL: GWAS828288_H (polyunsaturated fatty acid measurement QTL GWAS828288 (human)) Homo sapiens

Symbol: GWAS828288_H
Name: polyunsaturated fatty acid measurement QTL GWAS828288 (human)
RGD ID: 407179312
Trait: adipose unsaturated fatty acid amount   (VT:0005285)    
milk polyunsaturated fatty acid amount   (VT:0010374)    
Measurement Type: milk polyunsaturated fatty acid measurement   (CMO:0000821)    
LOD Score: Not Available
P Value: 2.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381615,045,737 - 15,045,738RGD_MAPPER_PIPELINEGRCh38
GRCh371615,139,594 - 15,139,595RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS828288_HHumanmilk polyunsaturated fatty acid measurement  IAGPrs34955778405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS828288_HHumanadipose unsaturated fatty acid amount  IAGPrs34955778405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538
GWAS828288_HHumanmilk polyunsaturated fatty acid amount  IAGPrs34955778405850206Based on the EFO term IDGWAS_CATALOGPMID:35213538

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS828288_HHumanpolyunsaturated fatty acid measurement  IAGPrs34955778405850206 GWAS_CATALOGPMID:35213538
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1604634PDXDC1pyridoxal dependent decarboxylase domain containing 1161497473515153218Human
1350127NTAN1N-terminal asparagine amidase161503785715056074Human

Position Markers

Peak: (rs34955778)
Human AssemblyChrPosition (strand)Source
GRCh381615,045,737 - 15,045,738RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407179312GWAS828288_Hpolyunsaturated fatty acid measurement QTL GWAS828288 (human)2e-13milk polyunsaturated fatty acid amount (VT:0010374)milk polyunsaturated fatty acid measurement (CMO:0000821)161504573715045738Human
407178280GWAS827256_Hphosphatidylcholine measurement QTL GWAS827256 (human)2e-12blood lipid amount (VT:0003949)161504573715045738Human
407122010GWAS770986_Hapolipoprotein A 1 measurement QTL GWAS770986 (human)4e-10apolipoprotein A 1 measurementblood apolipoprotein AI level (CMO:0000520)161504573715045738Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS828288_H GCST90092939 Polyunsaturated fatty acid levels 115,006 European ancestry individuals T 0.580038 2E-13 12.699 rs34955778 0.0298264 polyunsaturated fatty acid measurement (EFO:0010733)
PMID:35213538
GWAS770986_H GCST010241 Apolipoprotein A1 levels 393,193 European ancestry individuals T 0.581303 4E-10 9.398 rs34955778 0.0123761 apolipoprotein A 1 measurement (EFO:0004614)
PMID:32203549
GWAS827256_H GCST90060838 Phosphatidylcholine(38:2)_[M+H]1+/Phosphatidylethanolamine(41:2)_[M+H]1+ levels 5,662 Pakistani ancestry individuals T NR 2E-12 11.699 rs34955778 0.0756 phosphatidylcholine measurement (EFO:0010226)
PMID:34503513
None Available GCST90060766 Phosphatidylcholine(36:3)_[M+H]1+/Phosphatidylethanolamine(39:3)_[M+H]1+/Phosphatidate(41:4)_[M+NH4]1+ levels 5,662 Pakistani ancestry individuals T NR 2E-12 11.699 rs34955778 0.0416 phosphatidylcholine measurement (EFO:0010226)
PMID:34503513
None Available GCST90060926 Phosphatidylcholine(38:3)_[M+OAc]1-/Phosphatidylserine(42:2)_[M-H]1- levels 5,662 Pakistani ancestry individuals T NR 2E-12 11.699 rs34955778 0.0325 phosphatidylcholine measurement (EFO:0010226)
PMID:34503513
None Available GCST90060833 Phosphatidylcholine(38:3)_[M+H]1+/Phosphatidylethanolamine(41:3)_[M+H]1+/Phosphatidate(43:4)_[M+NH4]1+ levels 5,662 Pakistani ancestry individuals T NR 2E-12 11.699 rs34955778 0.0416 phosphatidylcholine measurement (EFO:0010226)
PMID:34503513
None Available GCST90060806 Phosphatidylethanolamine(40:2)_[M-H]1- levels 5,662 Pakistani ancestry individuals T NR 2E-12 11.699 rs34955778 0.0416 phosphatidylethanolamine measurement (EFO:0010228)
PMID:34503513
None Available GCST90060650 Cholesteryl ester(20:3)_[M+NH4]1+ levels 5,662 Pakistani ancestry individuals T NR 2E-12 11.699 rs34955778 0.0416 cholesteryl ester 20:3 measurement (EFO:0010347)
PMID:34503513
Database Acc Id Source(s)
GWAS Catalog GCST90092939 GWAS Catalog

RGD Curation Notes
Note Type Note Reference