GWAS824943_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS824943_H (monocyte percentage of leukocytes QTL GWAS824943 (human)) Homo sapiens

Symbol: GWAS824943_H
Name: monocyte percentage of leukocytes QTL GWAS824943 (human)
RGD ID: 407175967
Trait: monocyte percentage of leukocytes
Measurement Type: blood monocyte count to total leukocyte count ratio   (CMO:0000374)    
LOD Score: Not Available
P Value: 1.0E-17
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381205,683,928 - 205,683,929RGD_MAPPER_PIPELINEGRCh38
GRCh371205,653,056 - 205,653,057RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS824943_HHumanblood monocyte count to total leukocyte count ratio  IAGPrs11582805405850206Based on the EFO term IDGWAS_CATALOGPMID:32888494

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS824943_HHumanmonocyte percentage of leukocytes  IAGPrs11582805405850206 GWAS_CATALOGPMID:32888494
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
38626080LOC105371701uncharacterized LOC1053717011205680370205690435Human

Position Markers

Peak: (rs11582805)
Human AssemblyChrPosition (strand)Source
GRCh381205,683,928 - 205,683,929RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407175967GWAS824943_Hmonocyte percentage of leukocytes QTL GWAS824943 (human)1e-17monocyte percentage of leukocytesblood monocyte count to total leukocyte count ratio (CMO:0000374)1205683928205683929Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS824943_H GCST90002394 Monocyte percentage of white cells 408,112 British individuals T 0.460216 1E-17 17 rs11582805 0.018984554 monocyte percentage of leukocytes (EFO:0007989)
 PMID:32888494
Database Acc Id Source(s)
GWAS Catalog GCST90002394 GWAS Catalog

RGD Curation Notes
Note Type Note Reference