GWAS815281_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS815281_H (left ventricular structural measurement QTL GWAS815281 (human)) Homo sapiens

Symbol: GWAS815281_H
Name: left ventricular structural measurement QTL GWAS815281 (human)
RGD ID: 407166305
Trait: left ventricular structural measurement
Measurement Type: heart left ventricle morphological measurement   (CMO:0000951)    
LOD Score: Not Available
P Value: 1.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh384176,444,101 - 176,444,102RGD_MAPPER_PIPELINEGRCh38
GRCh374177,365,252 - 177,365,253RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS815281_HHumanheart left ventricle morphological measurement  IAGPrs6851508405850206Based on the EFO term IDGWAS_CATALOGPMID:28394258

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS815281_HHumanleft ventricular structural measurement  IAGPrs6851508405850206 GWAS_CATALOGPMID:28394258
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
151671213LOC124900817uncharacterized LOC1249008174176380907176521714Human

Position Markers

Peak: (rs6851508)
Human AssemblyChrPosition (strand)Source
GRCh384176,444,101 - 176,444,102RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407166305GWAS815281_Hleft ventricular structural measurement QTL GWAS815281 (human)0.0000001left ventricular structural measurementheart left ventricle morphological measurement (CMO:0000951)4176444101176444102Human
2292972PRSTS190_HProstate tumor susceptibility QTL 190 (human)4.130.0018Prostate tumor susceptibility4175186665190214555Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS815281_H GCST004646 Left ventricle wall thickness 30,201 European ancestry individuals T 0.6458 1E-7 7 rs6851508 0.0106 left ventricular structural measurement (EFO:0008205)
 PMID:28394258
Database Acc Id Source(s)
GWAS Catalog GCST004646 GWAS Catalog

RGD Curation Notes
Note Type Note Reference