GWAS810643_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS810643_H (heel bone mineral density QTL GWAS810643 (human)) Homo sapiens

Symbol: GWAS810643_H
Name: heel bone mineral density QTL GWAS810643 (human)
RGD ID: 407161667
Trait: heel bone mineral density
Measurement Type: bone mineral density   (CMO:0001226)    
LOD Score: Not Available
P Value: 1.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386167,726,632 - 167,726,633RGD_MAPPER_PIPELINEGRCh38
GRCh376168,127,312 - 168,127,313RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS810643_HHumanbone mineral density  IAGPrs528738405850206Based on the EFO term IDGWAS_CATALOGPMID:28869591

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS810643_HHumanheel bone mineral density  IAGPrs528738405850206 GWAS_CATALOGPMID:28869591
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs528738)
Human AssemblyChrPosition (strand)Source
GRCh386167,726,632 - 167,726,633RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407143585GWAS792561_Hheel bone mineral density QTL GWAS792561 (human)0.0000004heel bone mineral densitybone mineral density (CMO:0001226)6167726632167726633Human
407297299GWAS946275_Hheel bone mineral density QTL GWAS946275 (human)1e-13heel bone mineral densitybone mineral density (CMO:0001226)6167726632167726633Human
407161667GWAS810643_Hheel bone mineral density QTL GWAS810643 (human)1e-09heel bone mineral densitybone mineral density (CMO:0001226)6167726632167726633Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS792561_H GCST006288 Heel bone mineral density 76,067 European ancestry women, 66,420 European ancestry men G 0.898481 4E-7 6.398 rs528738 0.0414775 heel bone mineral density (EFO:0009270)
 PMID:28869591
GWAS810643_H GCST006288 Heel bone mineral density 76,067 European ancestry women, 66,420 European ancestry men G 0.897466 1E-9 9 rs528738 0.0350874 heel bone mineral density (EFO:0009270)
 PMID:28869591
GWAS946275_H GCST006433 Heel bone mineral density 394,929 European ancestry individuals ? NR 1E-13 13 rs528738 0.0255882 heel bone mineral density (EFO:0009270)
 PMID:30048462
Database Acc Id Source(s)
GWAS Catalog GCST006288 GWAS Catalog

RGD Curation Notes
Note Type Note Reference