GWAS805881_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS805881_H (schizophrenia QTL GWAS805881 (human)) Homo sapiens

Symbol: GWAS805881_H
Name: schizophrenia QTL GWAS805881 (human)
RGD ID: 407156905
Trait: schizophrenia
LOD Score: Not Available
P Value: 4.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh385146,882,926 - 146,882,927RGD_MAPPER_PIPELINEGRCh38
GRCh375146,262,489 - 146,262,490RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS805881_HHumanschizophrenia  IAGPrs319204405850206 GWAS_CATALOGPMID:28991256
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1352838PPP2R2Bprotein phosphatase 2 regulatory subunit Bbeta5146580742147081520Human

Position Markers

Peak: (rs319204)
Human AssemblyChrPosition (strand)Source
GRCh385146,882,926 - 146,882,927RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357314AASTH54_HAllergic/atopic asthma related QTL 54 (human)3.560.0003Reversible airflow obstructiontotal serum IgE5135892246150155845Human
407156905GWAS805881_Hschizophrenia QTL GWAS805881 (human)0.0000004schizophrenia5146882926146882927Human
407301531GWAS950507_Hschizophrenia QTL GWAS950507 (human)0.000005schizophrenia5146882926146882927Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS805881_H GCST004946 Schizophrenia 7,699 Chinese ancestry cases, 35,476 European ancestry cases, 18,327 Chinese ancestry controls, 46,839 European ancestry controls T NR 4E-7 6.398 rs319204 1.051 PMID:28991256
GWAS950507_H GCST007201 Schizophrenia 14,023 East Asian ancestry cases, 33,640 European ancestry cases, 31,505 East Asian ancestry controls, 43,456 European ancestry controls T NR 0.000005 5.302 rs319204 1.047 PMID:30285260
Database Acc Id Source(s)
GWAS Catalog GCST004946 GWAS Catalog

RGD Curation Notes
Note Type Note Reference