GWAS805876_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS805876_H (Epstein-Barr virus seropositivity QTL GWAS805876 (human)) Homo sapiens

Symbol: GWAS805876_H
Name: Epstein-Barr virus seropositivity QTL GWAS805876 (human)
RGD ID: 407156900
Trait: Epstein-Barr virus seropositivity
Measurement Type: serum anti-Epstein-Barr virus (EBV) antibody level   (CMO:0003143)    
LOD Score: Not Available
P Value: 3.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38632,614,800 - 32,614,801RGD_MAPPER_PIPELINEGRCh38
GRCh37632,582,577 - 32,582,578RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS805876_HHumanserum anti-Epstein-Barr virus (EBV) antibody level  IAGPrs3104415405850206Based on the EFO term IDGWAS_CATALOGPMID:37164013

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS805876_HHumanEpstein-Barr virus seropositivity  IAGPrs3104415405850206 GWAS_CATALOGPMID:37164013
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs3104415)
Human AssemblyChrPosition (strand)Source
GRCh38632,614,800 - 32,614,801RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407156900GWAS805876_HEpstein-Barr virus seropositivity QTL GWAS805876 (human)3e-10Epstein-Barr virus seropositivityserum anti-Epstein-Barr virus (EBV) antibody level (CMO:0003143)63261480032614801Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
407159501GWAS808477_HEpstein-Barr virus seropositivity QTL GWAS808477 (human)6e-11Epstein-Barr virus seropositivityserum anti-Epstein-Barr virus (EBV) antibody level (CMO:0003143)63261480032614801Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS805876_H GCST90294434 Seropositivity for human gammaherpesvirus 4 (Epstein-Barr virus) peptide (agilent_129) 1,745 individuals ? NR 3E-10 9.523 rs3104415 6.305 Epstein-Barr virus seropositivity (EFO:0010908)
 PMID:37164013
GWAS808477_H GCST90294401 Seropositivity for human gammaherpesvirus 4 (Epstein-Barr virus) peptide (agilent_321) 1,745 individuals ? NR 6E-11 10.222 rs3104415 6.545 Epstein-Barr virus seropositivity (EFO:0010908)
 PMID:37164013
Database Acc Id Source(s)
GWAS Catalog GCST90294434 GWAS Catalog

RGD Curation Notes
Note Type Note Reference