GWAS802109_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS802109_H (gut microbiome measurement QTL GWAS802109 (human)) Homo sapiens

Symbol: GWAS802109_H
Name: gut microbiome measurement QTL GWAS802109 (human)
RGD ID: 407153133
Trait: gut microbiome measurement
LOD Score: Not Available
P Value: 6.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh387111,901,636 - 111,901,637RGD_MAPPER_PIPELINEGRCh38
GRCh377111,541,692 - 111,541,693RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS802109_HHumangut microbiome measurement  IAGPrs12154775405850206 GWAS_CATALOGPMID:33462482

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1350295DOCK4dedicator of cytokinesis 47111726110112206399Human


Peak: (rs12154775)
Human AssemblyChrPosition (strand)Source
GRCh387111,901,636 - 111,901,637RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407153133GWAS802109_Hgut microbiome measurement QTL GWAS802109 (human)0.000006gut microbiome measurement7111901636111901637Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS802109_H GCST90011313 F_Lachnospiraceae abundance 8,956 German ancestry individuals ? NR 0.000006 5.222 rs12154775 0.091031164 gut microbiome measurement (EFO:0007874)
 PMID:33462482
Database
Acc Id
Source(s)
GWAS Catalog GCST90011313 GWAS Catalog

Note Type Note Reference