GWAS797566_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS797566_H (esterified cholesterol change measurement, high density lipoprotein cholesterol measurement QTL GWAS797566 (human)) Homo sapiens

Symbol: GWAS797566_H
Name: esterified cholesterol change measurement, high density lipoprotein cholesterol measurement QTL GWAS797566 (human)
RGD ID: 407148590
Trait: esterified cholesterol change measurement, high density lipoprotein cholesterol measurement
LOD Score: Not Available
P Value: 6.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381059,504,932 - 59,504,933RGD_MAPPER_PIPELINEGRCh38
GRCh371061,264,690 - 61,264,691RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
38634225LOC107984235uncharacterized LOC107984235105947954459538797Human

Position Markers

Peak: (rs147684079)
Human AssemblyChrPosition (strand)Source
GRCh381059,504,932 - 59,504,933RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
596969597GWAS1089116_Hesterified cholesterol change measurement, high density lipoprotein cholesterol measurement QTL GWAS1089116 (human)6e-09esterified cholesterol change measurement, high density lipoprotein cholesterol measurement105950493259504933Human
407148590GWAS797566_Hesterified cholesterol change measurement, high density lipoprotein cholesterol measurement QTL GWAS797566 (human)6e-09esterified cholesterol change measurement, high density lipoprotein cholesterol measurement105950493259504933Human
597220803GWAS1316877_Hesterified cholesterol change measurement, high density lipoprotein cholesterol measurement QTL GWAS1316877 (human)6e-09esterified cholesterol change measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)105950493259504933Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS1316877_H GCST90091816 Cholesterol esters in very large HDL meal response (LMM) null T 0.0231715 6E-9 8.222 rs147684079 0.197414 esterified cholesterol change measurement (EFO:0020904)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:34610981
Database Acc Id Source(s)
GWAS Catalog GCST90091816 GWAS Catalog

RGD Curation Notes
Note Type Note Reference