GWAS788147_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS788147_H (killer cell immunoglobulin-like receptor 2DL4 measurement QTL GWAS788147 (human)) Homo sapiens

Symbol: GWAS788147_H
Name: killer cell immunoglobulin-like receptor 2DL4 measurement QTL GWAS788147 (human)
RGD ID: 407139171
Trait: killer cell immunoglobulin-like receptor 2DL4 measurement
LOD Score: Not Available
P Value: 7.0E-22
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381954,908,874 - 54,908,875RGD_MAPPER_PIPELINEGRCh38
GRCh371955,420,234 - 55,420,235RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS788147_HHumankiller cell immunoglobulin-like receptor 2DL4 measurement  IAGPrs8111853405850206 GWAS_CATALOGPMID:36168886
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348186NCR1natural cytotoxicity triggering receptor 1195489819854938208Human

Position Markers

Peak: (rs8111853)
Human AssemblyChrPosition (strand)Source
GRCh381954,908,874 - 54,908,875RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559110SCL22_HSerum cholesterol level QTL 22 (human)3.590.000241Lipid levelLDL cholesterol193190759457907594Human
407139171GWAS788147_Hkiller cell immunoglobulin-like receptor 2DL4 measurement QTL GWAS788147 (human)7e-22killer cell immunoglobulin-like receptor 2DL4 measurement195490887454908875Human
1331657COPD9_HChronic obstructive pulmonary disease QTL 9 (human)1.94Chronic airflow obstructionpost-bronchodilator FEV1193102176057021760Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS788147_H GCST90162289 Killer cell immunoglobulin-like receptor 2DL4 levels 2,935 Qatari ancestry individuals G 0.430935 7E-22 21.155 rs8111853 0.260089 killer cell immunoglobulin-like receptor 2DL4 measurement (EFO:0008197)
 PMID:36168886
Database Acc Id Source(s)
GWAS Catalog GCST90162289 GWAS Catalog

RGD Curation Notes
Note Type Note Reference