GWAS787242_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS787242_H (triglycerides in medium LDL measurement QTL GWAS787242 (human)) Homo sapiens

Symbol: GWAS787242_H
Name: triglycerides in medium LDL measurement QTL GWAS787242 (human)
RGD ID: 407138266
Trait: triglycerides in medium LDL measurement
LOD Score: Not Available
P Value: 4.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3814105,766,769 - 105,766,770RGD_MAPPER_PIPELINEGRCh38
GRCh3714106,233,106 - 106,233,107RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS787242_HHumantriglycerides in medium LDL measurement  IAGPrs34295723405850206 GWAS_CATALOGPMID:38448586
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
735342IGHimmunoglobulin heavy locus14105586437106879844Human
1344522IGHG3immunoglobulin heavy constant gamma 3 (G3m marker)14105765914105771405Human

Position Markers

Peak: (rs34295723)
Human AssemblyChrPosition (strand)Source
GRCh3814105,766,769 - 105,766,770RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407142293GWAS791269_Htriglycerides in small LDL measurement QTL GWAS791269 (human)2e-21triglycerides in small LDL measurement 14105766769105766770Human
407138266GWAS787242_Htriglycerides in medium LDL measurement QTL GWAS787242 (human)4e-16triglycerides in medium LDL measurement 14105766769105766770Human
407085804GWAS734780_Htriglyceride measurement, low density lipoprotein cholesterol measurement QTL GWAS734780 (human)6e-11triglyceride measurement, low density lipoprotein cholesterol measurementblood low density lipoprotein cholesterol level (CMO:0000053)14105766769105766770Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS734780_H GCST90301993 Triglyceride levels in LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.6305 6E-11 10.222 rs34295723 0.0376 triglyceride measurement (EFO:0004530)
low density lipoprotein cholesterol measurement (EFO:0004611)
 PMID:38448586
GWAS787242_H GCST90302053 Triglycerides in medium LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.6305 4E-16 15.398 rs34295723 0.047 triglycerides in medium LDL measurement (EFO:0022322)
 PMID:38448586
GWAS791269_H GCST90302101 Triglycerides in small LDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.6305 2E-21 20.699 rs34295723 0.0549 triglycerides in small LDL measurement (EFO:0022323)
 PMID:38448586
Database Acc Id Source(s)
GWAS Catalog GCST90302053 GWAS Catalog

RGD Curation Notes
Note Type Note Reference