GWAS784104_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS784104_H (erythrocyte count QTL GWAS784104 (human)) Homo sapiens

Symbol: GWAS784104_H
Name: erythrocyte count QTL GWAS784104 (human)
RGD ID: 407135128
Trait: erythrocyte count
Measurement Type: red blood cell count   (CMO:0000025)    
LOD Score: Not Available
P Value: 6.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38316,849,028 - 16,849,029RGD_MAPPER_PIPELINEGRCh38
GRCh37316,890,535 - 16,890,536RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS784104_HHumanred blood cell count  IAGPrs116184520405850206Based on the EFO term IDGWAS_CATALOGPMID:36329257

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS784104_HHumanerythrocyte count  IAGPrs116184520405850206 GWAS_CATALOGPMID:36329257
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs116184520)
Human AssemblyChrPosition (strand)Source
GRCh38316,849,028 - 16,849,029RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human
407135128GWAS784104_Herythrocyte count QTL GWAS784104 (human)6e-11erythrocyte countred blood cell count (CMO:0000025)31684902816849029Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS784104_H GCST90239620 Red blood cell count 76,086 Taiwanese ancestry individuals ? NR 6E-11 10.222 rs116184520 N/A erythrocyte count (EFO:0004305)
 PMID:36329257
Database Acc Id Source(s)
GWAS Catalog GCST90239620 GWAS Catalog

RGD Curation Notes
Note Type Note Reference