GWAS780997_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS780997_H (insomnia measurement QTL GWAS780997 (human)) Homo sapiens

Symbol: GWAS780997_H
Name: insomnia measurement QTL GWAS780997 (human)
RGD ID: 407132021
Trait: insomnia measurement
LOD Score: Not Available
P Value: 3.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386169,561,539 - 169,561,540RGD_MAPPER_PIPELINEGRCh38
GRCh376169,961,635 - 169,961,636RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS780997_HHumaninsomnia measurement  IAGPrs13192566405850206 GWAS_CATALOGPMID:27992416
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1351994WDR27WD repeat domain 276169426420169702029Human

Position Markers

Peak: (rs13192566)
Human AssemblyChrPosition (strand)Source
GRCh386169,561,539 - 169,561,540RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407132021GWAS780997_Hinsomnia measurement QTL GWAS780997 (human)3e-08insomnia measurement6169561539169561540Human
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human
407229322GWAS878298_Hinsomnia QTL GWAS878298 (human)2e-08insomnia6169561539169561540Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS780997_H GCST003981 Insomnia up to 12,674 European ancestry male cases, up to 19,481 European ancestry female cases, up to 16,009 European ancestry male controls, up to 10,964 European ancestry female controls, G NR 3E-8 7.523 rs13192566 1.14 insomnia measurement (EFO:0007876)
 PMID:27992416
GWAS878298_H GCST006488 Insomnia complaints 12,863 European ancestry male cases, 40,776 European ancestry male controls C 0.146 2E-8 7.699 rs13192566 5.63 insomnia (EFO:0004698)
 PMID:28604731
Database Acc Id Source(s)
GWAS Catalog GCST003981 GWAS Catalog

RGD Curation Notes
Note Type Note Reference