GWAS779712_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS779712_H (calcium measurement QTL GWAS779712 (human)) Homo sapiens

Symbol: GWAS779712_H
Name: calcium measurement QTL GWAS779712 (human)
RGD ID: 407130736
Trait: calcium measurement
Measurement Type: blood calcium level   (CMO:0000502)    
LOD Score: Not Available
P Value: 2.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38171,734,008 - 1,734,009RGD_MAPPER_PIPELINEGRCh38
GRCh37171,637,302 - 1,637,303RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS779712_HHumanblood calcium level  IAGPrs3809872405850206Based on the EFO term IDGWAS_CATALOGPMID:33462484

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS779712_HHumancalcium measurement  IAGPrs3809872405850206 GWAS_CATALOGPMID:33462484
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1606736WDR81WD repeat domain 811717165231738585Human

Position Markers

Peak: (rs3809872)
Human AssemblyChrPosition (strand)Source
GRCh38171,734,008 - 1,734,009RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407134790GWAS783766_Hsex hormone-binding globulin measurement QTL GWAS783766 (human)6e-14sex hormone-binding globulin measurement1717340081734009Human
407130736GWAS779712_Hcalcium measurement QTL GWAS779712 (human)2e-13calcium measurementblood calcium level (CMO:0000502)1717340081734009Human
407071934GWAS720910_Hserum albumin measurement QTL GWAS720910 (human)2e-35serum albumin measurementserum albumin level (CMO:0000550)1717340081734009Human
406955900GWAS604876_Halpha-2-antiplasmin measurement QTL GWAS604876 (human)1e-44alpha-2-antiplasmin measurement1717340081734009Human
407130074GWAS779050_Halkaline phosphatase measurement QTL GWAS779050 (human)2e-16alkaline phosphatase measurementblood alkaline phosphatase activity level (CMO:0000576)1717340081734009Human
407135227GWAS784203_Hblood protein measurement QTL GWAS784203 (human)3e-10blood protein measurementblood protein measurement (CMO:0000028)1717340081734009Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS604876_H GCST90246395 Alpha-2-antiplasmin levels 10,708 European ancestry individuals A 0.26 1E-44 44 rs3809872 0.213 alpha-2-antiplasmin measurement (EFO:0020137)
 PMID:34648354
GWAS720910_H GCST90019493 Serum albumin levels 313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals G NR 2E-35 34.699 rs3809872 0.0352 serum albumin measurement (EFO:0004535)
 PMID:33462484
GWAS779050_H GCST90019494 Serum alkaline phosphatase levels 342,535 European ancestry individuals, 6,019 African ancestry individuals, 7,337 South Asian ancestry individuals G NR 2E-16 15.699 rs3809872 0.0222 alkaline phosphatase measurement (EFO:0004533)
 PMID:33462484
GWAS779712_H GCST90019500 Calcium levels 313,387 European ancestry individuals, 5,576 African ancestry individuals, 6,696 South Asian ancestry individuals G NR 2E-13 12.699 rs3809872 0.0208 calcium measurement (EFO:0004838)
 PMID:33462484
GWAS783766_H GCST90019518 Sex hormone-binding globulin levels 310,323 European ancestry individuals, 5,523 African ancestry individuals, 6,638 South Asian ancestry individuals G NR 6E-14 13.222 rs3809872 0.0214 sex hormone-binding globulin measurement (EFO:0004696)
 PMID:33462484
GWAS784203_H GCST90019522 Serum total protein levels 313,032 European ancestry individuals, 5,573 African ancestry individuals, 6,687 South Asian ancestry individuals G NR 3E-10 9.523 rs3809872 0.0179 blood protein measurement (EFO:0007937)
 PMID:33462484
Database Acc Id Source(s)
GWAS Catalog GCST90019500 GWAS Catalog

RGD Curation Notes
Note Type Note Reference