GWAS779115_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS779115_H (body mass index QTL GWAS779115 (human)) Homo sapiens

Symbol: GWAS779115_H
Name: body mass index QTL GWAS779115 (human)
RGD ID: 407130139
Trait: body mass index
Measurement Type: body mass index (BMI)   (CMO:0000105)    
LOD Score: Not Available
P Value: 1.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386163,396,879 - 163,396,880RGD_MAPPER_PIPELINEGRCh38
GRCh376163,817,911 - 163,817,912RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS779115_HHumanbody mass index (BMI)  IAGPrs9364687405850206Based on the EFO term IDGWAS_CATALOGPMID:25673413

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS779115_HHumanbody mass index  IAGPrs9364687405850206 GWAS_CATALOGPMID:25673413
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs9364687)
Human AssemblyChrPosition (strand)Source
GRCh386163,396,879 - 163,396,880RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407228116GWAS877092_Hbody mass index QTL GWAS877092 (human)0.0000009body mass indexbody mass index (BMI) (CMO:0000105)6163396879163396880Human
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
407068143GWAS717119_Hbody mass index QTL GWAS717119 (human)7e-16body mass indexbody mass index (BMI) (CMO:0000105)6163396879163396880Human
407130808GWAS779784_Hbody mass index QTL GWAS779784 (human)0.0000007body mass indexbody mass index (BMI) (CMO:0000105)6163396879163396880Human
407302730GWAS951706_Hbody mass index QTL GWAS951706 (human)2e-10body mass indexbody mass index (BMI) (CMO:0000105)6163396879163396880Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human
406936014GWAS584990_Hbody mass index QTL GWAS584990 (human)1e-09body mass indexbody mass index (BMI) (CMO:0000105)6163396879163396880Human
407130139GWAS779115_Hbody mass index QTL GWAS779115 (human)0.000001body mass indexbody mass index (BMI) (CMO:0000105)6163396879163396880Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS584990_H GCST90179150 Body mass index (MTAG) 694,649 European ancestry individuals T NR 1E-9 9 rs9364687 0.0099 body mass index (EFO:0004340)
 PMID:36376304
GWAS717119_H GCST90255621 Body mass index 1,122,049 European ancestry individuals G NR 7E-16 15.155 rs9364687 0.012 body mass index (EFO:0004340)
 PMID:36581621
GWAS779115_H GCST002783 Body mass index up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals G 0.569 0.000001 6 rs9364687 0.015 body mass index (EFO:0004340)
 PMID:25673413
GWAS779784_H GCST002783 Body mass index up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals G 0.571 7E-7 6.155 rs9364687 0.015 body mass index (EFO:0004340)
 PMID:25673413
GWAS877092_H GCST002783 Body mass index up to 104,666 European ancestry male individuals, up to 132,115 European ancestry female individuals, 370 African American male individuals, 517 African American female individuals, 512 Hispanic male individuals, 764 Hispanic female individuals G 0.567 9E-7 6.046 rs9364687 0.02 body mass index (EFO:0004340)
 PMID:25673413
GWAS951706_H GCST006368 Body mass index 315,347 European ancestry individuals, 8,322 Hispanic/Latino individuals, 7,290 East Asian ancestry individuals, 3,069 African American individuals, 459 South Asian ancestry individuals G NR 2E-10 9.699 rs9364687 0.01 body mass index (EFO:0004340)
 PMID:30108127
None Available GCST90446645 Body mass index 650,000 European ancestry individuals G 0.6034 2E-10 9.699 rs9364687 0.0112 body mass index (EFO:0004340)
 PMID:39375568
Database Acc Id Source(s)
GWAS Catalog GCST002783 GWAS Catalog

RGD Curation Notes
Note Type Note Reference