GWAS777895_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS777895_H (unipolar depression QTL GWAS777895 (human)) Homo sapiens

Symbol: GWAS777895_H
Name: unipolar depression QTL GWAS777895 (human)
RGD ID: 407128919
Trait: unipolar depression
LOD Score: Not Available
P Value: 2.0E-6
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381735,516,493 - 35,516,494RGD_MAPPER_PIPELINEGRCh38
GRCh371733,843,512 - 33,843,513RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Depression  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2291763SLFN12Lschlafen family member 12 like173546425435537678Human

Position Markers

Peak: (rs8070473)
Human AssemblyChrPosition (strand)Source
GRCh381735,516,493 - 35,516,494RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407128919GWAS777895_Hunipolar depression QTL GWAS777895 (human)0.000002unipolar depression173551649335516494Human
1298406BP16_HBlood pressure QTL 16 (human)0.0004Blood pressurehypertension susceptibility171477864740778647Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
None Available GCST000779 Depression (quantitative trait) 3,972 Sardinian individuals, 839 European ancestry individuals T 0.32 0.000002 5.699 rs8070473 0.16 PMID:20800221
Database Acc Id Source(s)
GWAS Catalog GCST000779 GWAS Catalog

RGD Curation Notes
Note Type Note Reference