GWAS777700_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS777700_H (testosterone measurement QTL GWAS777700 (human)) Homo sapiens

Symbol: GWAS777700_H
Name: testosterone measurement QTL GWAS777700 (human)
RGD ID: 407128724
Trait: testosterone measurement
Measurement Type: serum testosterone level   (CMO:0000568)    
LOD Score: Not Available
P Value: 3.0E-7
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh386170,279,471 - 170,279,472RGD_MAPPER_PIPELINEGRCh38
GRCh376170,588,559 - 170,588,560RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS777700_HHumanserum testosterone level  IAGPrs2344744405850206Based on the EFO term IDGWAS_CATALOGPMID:35192695

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS777700_HHumantestosterone measurement  IAGPrs2344744405850206 GWAS_CATALOGPMID:35192695
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs2344744)
Human AssemblyChrPosition (strand)Source
GRCh386170,279,471 - 170,279,472RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407102595GWAS751571_Htestosterone measurement QTL GWAS751571 (human)1e-09testosterone measurementserum testosterone level (CMO:0000568)6170279471170279472Human
407128724GWAS777700_Htestosterone measurement QTL GWAS777700 (human)0.0000003testosterone measurementserum testosterone level (CMO:0000568)6170279471170279472Human
407132981GWAS781957_Htestosterone measurement QTL GWAS781957 (human)0.0000004testosterone measurementserum testosterone level (CMO:0000568)6170279471170279472Human
1643404BMD3_HBone mineral density QTL 3 (human)2.420.0005Bone mineral density6157563614170805979Human
1643367BW323_HBody weight QTL 323 (human)2.420.0005Body fat amount6157563614170805979Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS751571_H GCST90012112 Total testosterone levels 230,454 European ancestry women G 0.41468099999999997 1E-9 9 rs2344744 0.0178199 testosterone measurement (EFO:0004908)
 PMID:32042192
GWAS777700_H GCST90104272 Testosterone levels 182,648 European ancestry individuals G 0.425303 3E-7 6.523 rs2344744 0.0172387 testosterone measurement (EFO:0004908)
 PMID:35192695
GWAS781957_H GCST90104296 Testosterone levels 4,229 African ancestry individuals, 182,648 European ancestry individuals ? NR 4E-7 6.398 rs2344744 5.066 testosterone measurement (EFO:0004908)
 PMID:35192695
Database Acc Id Source(s)
GWAS Catalog GCST90104272 GWAS Catalog

RGD Curation Notes
Note Type Note Reference