GWAS774824_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS774824_H (esterified cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS774824 (human)) Homo sapiens

Symbol: GWAS774824_H
Name: esterified cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS774824 (human)
RGD ID: 407125848
Trait: esterified cholesterol measurement, high density lipoprotein cholesterol measurement
Measurement Type: blood high density lipoprotein cholesterol level   (CMO:0000052)    
LOD Score: Not Available
P Value: 1.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3814102,772,689 - 102,772,690RGD_MAPPER_PIPELINEGRCh38
GRCh3714103,239,026 - 103,239,027RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS774824_HHumanblood high density lipoprotein cholesterol level  IAGPrs12891207405850206Based on the EFO term IDGWAS_CATALOGPMID:38448586

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS774824_HHumanesterified cholesterol measurement  IAGPrs12891207405850206 GWAS_CATALOGPMID:38448586
GWAS774824_HHumanhigh density lipoprotein cholesterol measurement  IAGPrs12891207405850206 GWAS_CATALOGPMID:38448586
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs12891207)
Human AssemblyChrPosition (strand)Source
GRCh3814102,772,689 - 102,772,690RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407131148GWAS780124_Hfree cholesterol in very large HDL measurement QTL GWAS780124 (human)6e-14free cholesterol in very large HDL measurement 14102772689102772690Human
407130127GWAS779103_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS779103 (human)3e-14total cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)14102772689102772690Human
407137215GWAS786191_Htotal lipids in very large HDL measurement QTL GWAS786191 (human)9e-11total lipids in very large HDL measurement 14102772689102772690Human
407125848GWAS774824_Hesterified cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS774824 (human)1e-13esterified cholesterol measurement, high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)14102772689102772690Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS774824_H GCST90302128 Cholesterol esters in very large HDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4685 1E-13 13 rs12891207 0.0295 esterified cholesterol measurement (EFO:0008589)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:38448586
GWAS779103_H GCST90302126 Total cholesterol levels in very large HDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4692 3E-14 13.523 rs12891207 0.0308 total cholesterol measurement (EFO:0004574)
high density lipoprotein cholesterol measurement (EFO:0004612)
 PMID:38448586
GWAS780124_H GCST90302130 Free cholesterol in very large HDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4694 6E-14 13.222 rs12891207 0.0305 free cholesterol in very large HDL measurement (EFO:0022273)
 PMID:38448586
GWAS786191_H GCST90302132 Total lipids in very large HDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals A 0.4693 9E-11 10.046 rs12891207 0.0264 total lipids in very large HDL measurement (EFO:0022312)
 PMID:38448586
Database Acc Id Source(s)
GWAS Catalog GCST90302128 GWAS Catalog

RGD Curation Notes
Note Type Note Reference