GWAS774196_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS774196_H (type 1 diabetes mellitus QTL GWAS774196 (human)) Homo sapiens

Symbol: GWAS774196_H
Name: type 1 diabetes mellitus QTL GWAS774196 (human)
RGD ID: 407125220
Trait: type 1 diabetes mellitus
LOD Score: Not Available
P Value: 3.0E-16
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382230,185,733 - 30,185,734RGD_MAPPER_PIPELINEGRCh38
GRCh372230,581,722 - 30,581,723RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS774196_HHumantype 1 diabetes mellitus  IAGPrs5753037405850206 GWAS_CATALOGPMID:19430480
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348799HORMAD2HORMA domain containing 2223007773230207456Human
16553258AC002378.1novel transcript223018281830207194Human

Position Markers

Peak: (rs5753037)
Human AssemblyChrPosition (strand)Source
GRCh382230,185,733 - 30,185,734RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407125220GWAS774196_Htype 1 diabetes mellitus QTL GWAS774196 (human)3e-16type 1 diabetes mellitus223018573330185734Human
1581529BP71_HBlood pressure QTL 71 (human)20.001Blood pressurepulse pressure221109496637094966Human
2289428BW313_HBody weight QTL 313 (human)2.090.0015Body weightBMI221134428437344284Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS774196_H GCST000392 Type 1 diabetes 7,514 European ancestry cases, 9,045 European ancestry controls T 0.39 3E-16 15.523 rs5753037 1.1 PMID:19430480
Database Acc Id Source(s)
GWAS Catalog GCST000392 GWAS Catalog

RGD Curation Notes
Note Type Note Reference