GWAS772582_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS772582_H (smoking cessation QTL GWAS772582 (human)) Homo sapiens

Symbol: GWAS772582_H
Name: smoking cessation QTL GWAS772582 (human)
RGD ID: 407123606
Trait: smoking cessation
LOD Score: Not Available
P Value: 9.0E-10
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38316,809,442 - 16,809,443RGD_MAPPER_PIPELINEGRCh38
GRCh37316,850,944 - 16,850,945RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS772582_HHumansmoking cessation  IAGPrs7625399405850206 GWAS_CATALOGPMID:30643251
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs7625399)
Human AssemblyChrPosition (strand)Source
GRCh38316,809,442 - 16,809,443RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407123606GWAS772582_Hsmoking cessation QTL GWAS772582 (human)9e-10smoking cessation31680944216809443Human
2316345GLUCO224_HGlucose level QTL 224 (human)1.270.008Glucose level3121543441Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS772582_H GCST007464 Smoking cessation (MTAG) up to 820,192 European ancestry individuals C 0.0939 9E-10 9.046 rs7625399 0.0160711 smoking cessation (EFO:0004319)
 PMID:30643251
Database Acc Id Source(s)
GWAS Catalog GCST007464 GWAS Catalog

RGD Curation Notes
Note Type Note Reference