GWAS768983_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS768983_H (phospholipids in IDL measurement QTL GWAS768983 (human)) Homo sapiens

Symbol: GWAS768983_H
Name: phospholipids in IDL measurement QTL GWAS768983 (human)
RGD ID: 407120007
Trait: phospholipids in IDL measurement
Measurement Type: blood intermediate density lipoprotein phospholipid level   (CMO:0001574)    
LOD Score: Not Available
P Value: 2.0E-13
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38632,449,616 - 32,449,617RGD_MAPPER_PIPELINEGRCh38
GRCh37632,417,393 - 32,417,394RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS768983_HHumanblood intermediate density lipoprotein phospholipid level  IAGPrs28895061405850206Based on the EFO term IDGWAS_CATALOGPMID:38448586

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS768983_HHumanphospholipids in IDL measurement  IAGPrs28895061405850206 GWAS_CATALOGPMID:38448586
Experimental Data Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs28895061)
Human AssemblyChrPosition (strand)Source
GRCh38632,449,616 - 32,449,617RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358839MULTSCL5_HMultiple sclerosis susceptibility QTL 5 (human)Multiple sclerosis susceptibility61958431145584311Human
407120007GWAS768983_Hphospholipids in IDL measurement QTL GWAS768983 (human)2e-13phospholipids in IDL measurementblood intermediate density lipoprotein phospholipid level (CMO:0001574)63244961632449617Human
1643377BW325_HBody weight QTL 325 (human)2.320.0005Body fat amount6691196032911960Human
1643569GLUCO21_HGlucose level QTL 21 (human)0.021Glucose levelnon-insulin-dependent6691196032911960Human
407056555GWAS705531_Hphospholipids in VLDL measurement QTL GWAS705531 (human)2e-18cholesterol in very small VLDL measurement 63244961632449617Human
1298458BW9_HBody weight QTL 9 (human)2.70.0002Body fat amount6691196032911960Human
407054666GWAS703642_Htotal lipids in very small VLDL measurement QTL GWAS703642 (human)8e-21total lipids in very small VLDL measurement63244961632449617Human
1298431RA11_HRheumatoid arthritis QTL 11 (human)0.0000024Joint/bone inflammationrheumatoid arthritis61991188340191709Human
1358854MULTSCL4_HMultiple sclerosis susceptibility QTL 4 (human)Multiple sclerosis susceptibility6691196032911960Human
407158353GWAS807329_Hfree cholesterol in very small VLDL measurement QTL GWAS807329 (human)1e-18free cholesterol in very small VLDL measurement 63244961632449617Human
1358857MULTSCL19_HMultiple sclerosis susceptibility QTL 19 (human)Multiple sclerosis susceptibility61958431145584311Human
407150777GWAS799753_Hvery low density lipoprotein cholesterol measurement, esterified cholesterol measurement QTL GWAS799753 (human)3e-17very low density lipoprotein cholesterol measurement, esterified cholesterol measurementblood very low density lipoprotein cholesterol level (CMO:0000648)63244961632449617Human
1643399BMD5_HBone mineral density QTL 5 (human)2.320.0005Bone mineral density6691196032911960Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS703642_H GCST90302156 Total lipids in very small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.1742 8E-21 20.097 rs28895061 0.0498 total lipids in very small VLDL measurement (EFO:0022156)
 PMID:38448586
GWAS705531_H GCST90302158 Phospholipids in very small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.1743 2E-18 17.699 rs28895061 0.047 phospholipids in VLDL measurement (EFO:0022301)
 PMID:38448586
GWAS768983_H GCST90301983 Phospholipids in IDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.1744 2E-13 12.699 rs28895061 0.0393 phospholipids in IDL measurement (EFO:0022164)
 PMID:38448586
GWAS799753_H GCST90302152 Cholesterol esters in very small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.174 3E-17 16.523 rs28895061 0.0448 very low density lipoprotein cholesterol measurement (EFO:0008317)
esterified cholesterol measurement (EFO:0008589)
 PMID:38448586
GWAS807329_H GCST90302154 Free cholesterol in very small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.1741 1E-18 18 rs28895061 0.0469 free cholesterol in very small VLDL measurement (EFO:0022275)
 PMID:38448586
None Available GCST90302150 Total cholesterol in very small VLDL 4,435 East Asian ancestry individuals, 11,340 South Asian ancestry individuals, 120,241 European ancestry individuals T 0.1741 2E-18 17.699 rs28895061 0.0466 cholesterol in very small VLDL measurement (EFO:0022231)
 PMID:38448586
Database Acc Id Source(s)
GWAS Catalog GCST90301983 GWAS Catalog

RGD Curation Notes
Note Type Note Reference