GWAS767607_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS767607_H (smoking status measurement QTL GWAS767607 (human)) Homo sapiens

Symbol: GWAS767607_H
Name: smoking status measurement QTL GWAS767607 (human)
RGD ID: 407118631
Trait: smoking status measurement
LOD Score: Not Available
P Value: 6.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh38778,510,264 - 78,510,265RGD_MAPPER_PIPELINEGRCh38
GRCh37778,139,581 - 78,139,582RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS767607_HHumansmoking status measurement  IAGPrs1030015405850206 GWAS_CATALOGPMID:30643251
References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
735850MAGI2membrane associated guanylate kinase, WW and PDZ domain containing 277801705579453667Human

Position Markers

Peak: (rs1030015)
Human AssemblyChrPosition (strand)Source
GRCh38778,510,264 - 78,510,265RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407118631GWAS767607_Hsmoking status measurement QTL GWAS767607 (human)6e-08smoking status measurement77851026478510265Human
407118687GWAS767663_Hsmoking status measurement QTL GWAS767663 (human)2e-08smoking status measurement77851026478510265Human
407071852GWAS720828_Hbody mass index QTL GWAS720828 (human)1e-10body mass indexbody mass index (BMI) (CMO:0000105)77851026478510265Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS720828_H GCST009004 Body mass index 806,834 European ancestry individuals T 0.5422 1E-10 10 rs1030015 0.0109 body mass index (EFO:0004340)
 PMID:30239722
GWAS767607_H GCST007468 Smoking initiation (ever regular vs never regular) (MTAG) up to 1,359,002 European ancestry individuals T 0.52 6E-8 7.222 rs1030015 0.00585017 smoking status measurement (EFO:0006527)
 PMID:30643251
GWAS767663_H GCST007474 Smoking initiation (ever regular vs never regular) up to 1,232,091 European ancestry individuals T 0.519564 2E-8 7.699 rs1030015 0.014289635 smoking status measurement (EFO:0006527)
 PMID:30643251
Database Acc Id Source(s)
GWAS Catalog GCST007468 GWAS Catalog

RGD Curation Notes
Note Type Note Reference