GWAS763898_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS763898_H (body height QTL GWAS763898 (human)) Homo sapiens

Symbol: GWAS763898_H
Name: body height QTL GWAS763898 (human)
RGD ID: 407114922
Trait: body height   (VT:0001253)    
Measurement Type: body height   (CMO:0000106)    
LOD Score: Not Available
P Value: 3E-101
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh382033,712,828 - 33,712,829RGD_MAPPER_PIPELINEGRCh38
GRCh372032,300,634 - 32,300,635RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS763898_HHumanbody height  IAGPrs34879158405850206Based on the EFO term IDGWAS_CATALOGPMID:30595370

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS763898_HHumanbody height  IAGPrs34879158405850206Based on the EFO term IDGWAS_CATALOGPMID:30595370

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS763898_HHumanbody height  IAGPrs34879158405850206 GWAS_CATALOGPMID:30595370
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
body height  (IAGP)

Vertebrate Trait
body height  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1348847PXMP4peroxisomal membrane protein 4203370275833720310Human

Position Markers

Peak: (rs34879158)
Human AssemblyChrPosition (strand)Source
GRCh382033,712,828 - 33,712,829RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407174199GWAS823175_Happendicular lean mass QTL GWAS823175 (human)2e-63appendicular lean mass203371282833712829Human
406935221GWAS584197_Happendicular lean mass QTL GWAS584197 (human)9e-13appendicular lean mass203371282833712829Human
407114922GWAS763898_Hbody height QTL GWAS763898 (human)3e-101body height (VT:0001253)body height (CMO:0000106)203371282833712829Human
407119723GWAS768699_Hsexual dimorphism measurement QTL GWAS768699 (human)1e-20sexual dimorphism measurement203371282833712829Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS584197_H GCST009577 Appendicular lean mass 181,862 European ancestry elderly individuals C 0.26197 9E-13 12.046 rs34879158 0.0559388 appendicular lean mass (EFO:0004980)
 PMID:31761296
GWAS763898_H GCST007841 Height approximately 458,000 European ancestry individuals ? NR 3E-101 100.523 rs34879158 N/A body height (EFO:0004339)
 PMID:30595370
GWAS768699_H GCST90270118 Multi-trait sex score 141,980 European ancestry males ? NR 1E-20 20 rs34879158 N/A sexual dimorphism measurement (EFO:0021796)
 PMID:37277458
GWAS823175_H GCST90000025 Appendicular lean mass 450,243 European ancestry individuals A 0.737 2E-63 62.699 rs34879158 0.0363 appendicular lean mass (EFO:0004980)
 PMID:33097823
Database Acc Id Source(s)
GWAS Catalog GCST007841 GWAS Catalog

RGD Curation Notes
Note Type Note Reference