GWAS760766_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS760766_H (erythrocyte count QTL GWAS760766 (human)) Homo sapiens

Symbol: GWAS760766_H
Name: erythrocyte count QTL GWAS760766 (human)
RGD ID: 407111790
Trait: erythrocyte count
Measurement Type: red blood cell count   (CMO:0000025)    
LOD Score: Not Available
P Value: 9.0E-9
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381773,199,810 - 73,199,811RGD_MAPPER_PIPELINEGRCh38
GRCh371771,195,949 - 71,195,950RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS760766_HHumanred blood cell count  IAGPrs1009110405850206Based on the EFO term IDGWAS_CATALOGPMID:30595370

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS760766_HHumanerythrocyte count  IAGPrs1009110405850206 GWAS_CATALOGPMID:30595370
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1312123COG1component of oligomeric golgi complex 1177319305573208507Human
155226914LOC126862634CDK7 strongly-dependent group 2 enhancer GRCh37_chr17:71195948-71197147177319980973201008Human

Position Markers

Peak: (rs1009110)
Human AssemblyChrPosition (strand)Source
GRCh381773,199,810 - 73,199,811RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407111790GWAS760766_Herythrocyte count QTL GWAS760766 (human)9e-09erythrocyte countred blood cell count (CMO:0000025)177319981073199811Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS760766_H GCST007069 Red blood cell count approximately 445,000 European ancestry individuals ? NR 9E-9 8.046 rs1009110 N/A erythrocyte count (EFO:0004305)
 PMID:30595370
Database Acc Id Source(s)
GWAS Catalog GCST007069 GWAS Catalog

RGD Curation Notes
Note Type Note Reference