GWAS758487_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS758487_H (body height QTL GWAS758487 (human)) Homo sapiens

Symbol: GWAS758487_H
Name: body height QTL GWAS758487 (human)
RGD ID: 407109511
Trait: body height   (VT:0001253)    
Measurement Type: body height   (CMO:0000106)    
LOD Score: Not Available
P Value: 4.0E-8
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh381523,923,265 - 23,923,266RGD_MAPPER_PIPELINEGRCh38
GRCh371524,168,412 - 24,168,413RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS758487_HHumanbody height  IAGPrs58283628405850206Based on the EFO term IDGWAS_CATALOGPMID:30595370

Vertebrate Trait
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS758487_HHumanbody height  IAGPrs58283628405850206Based on the EFO term IDGWAS_CATALOGPMID:30595370

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS758487_HHumanbody height  IAGPrs58283628405850206 GWAS_CATALOGPMID:30595370
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
body height  (IAGP)

Vertebrate Trait
body height  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Position Markers

Peak: (rs58283628)
Human AssemblyChrPosition (strand)Source
GRCh381523,923,265 - 23,923,266RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
407109511GWAS758487_Hbody height QTL GWAS758487 (human)4e-08body height (VT:0001253)body height (CMO:0000106)152392326523923266Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS758487_H GCST007841 Height approximately 458,000 European ancestry individuals ? NR 4E-8 7.398 rs58283628 N/A body height (EFO:0004339)
 PMID:30595370
Database Acc Id Source(s)
GWAS Catalog GCST007841 GWAS Catalog

RGD Curation Notes
Note Type Note Reference